Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF592 and GFF593 are separated by 141 nucleotidesGFF593 and GFF594 are separated by 378 nucleotidesGFF594 and GFF595 overlap by 20 nucleotidesGFF595 and GFF596 are separated by 11 nucleotides GFF592 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 263,662 to 264,846 GFF592 GFF593 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 264,988 to 267,939 GFF593 GFF594 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD, at 268,318 to 268,941 GFF594 GFF595 - two component, sigma54 specific, transcriptional regulator, Fis family, at 268,922 to 270,427 GFF595 GFF596 - Two-component sensor PilS, at 270,439 to 272,241 GFF596
Group Condition GFF592 GFF593 GFF594 GFF595 GFF596
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. N.D. N.D. -0.4 -0.2
carbon source Ying_AminoAcid20 rep B; time point 2 N.D. N.D. N.D. -0.3 -0.3
carbon source Ying_AminoAcid20 rep C; time point 2 N.D. N.D. N.D. -0.4 -0.1
carbon source Ying_AminoAcid20 rep A; time point 2 N.D. N.D. N.D. -0.4 -0.1
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. N.D. N.D. -0.4 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 2 N.D. N.D. N.D. -0.3 -0.1
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. N.D. N.D. -0.3 -0.1
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. N.D. N.D. -0.4 +0.0
carbon source Ying_AminoAcid20 rep B; time point 3 N.D. N.D. N.D. -0.3 -0.1
carbon source Ying_all64 rep B; time point 2 N.D. N.D. N.D. -0.2 -0.2
carbon source Ying_all64 rep B; time point 3 N.D. N.D. N.D. -0.2 -0.1
carbon source Ying_Nucleobase14 rep A; time point 1 N.D. N.D. N.D. -0.1 -0.1
carbon source Ying_AminoAcid20 rep A; time point 3 N.D. N.D. N.D. -0.2 -0.1
carbon source Ying_all64 rep A; time point 2 N.D. N.D. N.D. -0.2 -0.1
carbon source Ying_AminoAcid20 rep B; time point 1 N.D. N.D. N.D. -0.3 +0.0
carbon source Ying_sugar7 rep C; time point 1 N.D. N.D. N.D. -0.1 +0.1
carbon source Ying_sugar7 rep C; time point 2 N.D. N.D. N.D. -0.0 +0.3
carbon source Ying_Others16 rep B; time point 3 N.D. N.D. N.D. +0.2 +0.2
carbon source Ying_sugar7 rep A; time point 1 N.D. N.D. N.D. +0.3 +0.1
carbon source Ying_Others16 rep C; time point 2 N.D. N.D. N.D. +0.1 +0.3
carbon source Ying_sugar7 rep C; time point 3 N.D. N.D. N.D. +0.1 +0.4
carbon source Ying_sugar7 rep A; time point 3 N.D. N.D. N.D. +0.3 +0.3
carbon source Ying_sugar7 rep B; time point 3 N.D. N.D. N.D. +0.3 +0.4
carbon source Ying_Others16 rep A; time point 3 N.D. N.D. N.D. +0.5 +0.3
carbon source Ying_Others16 rep C; time point 1 N.D. N.D. N.D. +0.3 +0.5
carbon source Ying_Others16 rep C; time point 3 N.D. N.D. N.D. +0.4 +0.5
carbon source Ying_Others16 rep B; time point 1 N.D. N.D. N.D. +0.5 +0.5
carbon source Ying_Others16 rep A; time point 1 N.D. N.D. N.D. +0.6 +0.6
carbon source Ying_all64 rep C; time point 2 N.D. N.D. N.D. +2.4 +1.2
carbon source Ying_all64 rep C; time point 3 N.D. N.D. N.D. +2.7 +1.5
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