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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5914 and GFF5915 are separated by 18 nucleotides
GFF5915 and GFF5916 are separated by 71 nucleotides
GFF5916 and GFF5917 are separated by 58 nucleotides
GFF5917 and GFF5918 are separated by 41 nucleotides
GFF5914 - hypothetical protein, at 129,594 to 130,706
GFF5914
GFF5915 - T6SS secretion lipoprotein TssJ (VasD), at 130,725 to 131,237
GFF5915
GFF5916 - T6SS component TssA (ImpA), at 131,309 to 132,349
GFF5916
GFF5917 - T6SS component TssB (ImpB/VipA), at 132,408 to 132,923
GFF5917
GFF5918 - T6SS component TssC (ImpC/VipB), at 132,965 to 134,458
GFF5918
Group
Condition
GFF5914
GFF5915
GFF5916
GFF5917
GFF5918
complex community
Community=Kojac gum; Passage=4
-0.2
-0.3
+0.2
-5.9
+0.0
complex community
Community=Locust bean gum; Passage=4
-1.1
-0.2
-1.1
-0.1
-0.0
complex community
Community=arabino-guar; Passage=4
-1.4
+0.0
+0.6
-0.2
-0.8
phage
phage_bap4
-0.8
+0.3
-0.2
-0.5
-0.0
complex community
Community=Locust bean gum; Passage=4
-1.0
-0.3
+0.1
-0.3
+0.5
vitamin
M9 with Supernatant from Cyptococcus
-0.5
+0.3
+0.3
-0.7
-0.3
phage
phage_bap4
-0.9
+0.3
-0.3
+0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.6
-0.8
+0.1
-0.2
-0.3
complex community
Community=guar; Passage=4
+0.2
-0.0
-0.6
-0.5
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.6
-0.4
-0.0
+0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.7
-0.5
+0.0
-0.4
-0.4
complex community
Community=arabino-guar; Passage=4
+0.7
+0.2
-0.0
-0.5
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.0
+0.0
+0.0
+0.6
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.5
-0.1
-0.3
-0.2
-0.3
phage
phage_bap4
-1.3
+0.3
+0.0
+0.2
+0.4
phage
phage_bap4
-0.6
+0.2
-0.2
+0.6
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-1.2
+0.2
+0.3
+0.2
+0.2
phage
phage_bap4
-0.1
+0.3
-0.2
-0.4
+0.3
complex community
Community=guar; Passage=4
+0.4
-0.4
-0.3
+0.4
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.5
-0.4
+0.1
+0.2
+0.1
complex community
Community=arabino-guar; Passage=4
+0.1
-0.5
-0.1
+0.5
+0.6
vitamin
M9 with Supernatant from Cyptococcus
+0.8
-0.1
+0.2
+0.2
-0.1
complex community
Community=arabino-guar; Passage=4
+1.1
+0.1
-0.2
+0.3
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.7
+0.2
+0.2
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.6
-0.0
+0.5
+0.3
-0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.7
+0.5
-0.1
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.8
+0.3
+0.1
+0.1
+0.2
complex community
Community=guar; Passage=4
+1.0
+0.8
+0.1
-0.6
+0.2
complex community
Community=guar; Passage=4
+0.4
-0.0
-0.4
+1.3
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.8
-0.4
+0.8
+1.5
-0.3
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