Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02990	PS417_02995	PS417_03000	PS417_03005	PS417_03010
solid stress	Fraxetin 3 mM; solid stress	-4.9	-0.4	-1.9	-0.4	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.1	-0.4	-1.4	-1.6	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	-0.4	-1.5	-1.4	-0.1
soil	soil sample 3; outgrowth in LB	-3.0	-0.4	-0.2	-1.1	+0.5
soil	soil sample 5; outgrowth in LB	-0.3	-0.5	-1.7	-1.0	-0.0
soil	soil sample 6; outgrowth in LB	-2.1	-0.2	-0.7	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.2	-0.9	-1.5	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.0	-1.7	-1.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.0	-1.2	-0.6	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.4	-0.4	-1.9	+0.1
solid stress	Fraxetin 3 mM; solid stress	-1.5	-0.1	-0.6	-0.6	-0.0
stress	methylglyoxal 0.032 vol%	-0.5	-1.0	-0.4	-0.8	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	+0.2	-1.1	-1.1	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	-1.0	-1.3	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.0	-1.5	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.8	-1.1	+0.2	-0.5
soil	soil sample 8; outgrowth in LB	-0.3	+0.4	-1.2	-0.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.8	-1.7	+0.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.7	-0.3	-1.0	-0.1
soil	soil sample 7; outgrowth in LB	+0.5	-0.0	-1.0	-1.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.7	-0.5	-0.9	-0.7	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.5	-0.3	-1.9	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.5	-0.6	-1.0	-0.4
motility	inner cut, LB soft agar motility assay	+0.2	+0.6	-0.9	-1.0	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5	+0.3	-0.9	-1.0	+0.2
soil	soil sample 4; outgrowth in LB	-1.2	+0.7	+0.7	-1.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.0	+0.7	-0.4	-0.6	-0.1
phage	P. simiae OR Antrim MOI 10	+1.3	+1.0	-0.4	-0.5	+0.2
root	root sample 6; outgrowth in LB	+1.4	+0.5	-0.3	-0.3	+0.6
stress	Gentamicin 0.008 mg/ml	+0.1	+0.1	+1.2	+1.5	-0.2