Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF588 and GFF589 are separated by 70 nucleotidesGFF589 and GFF590 are separated by 162 nucleotidesGFF590 and GFF591 are separated by 119 nucleotidesGFF591 and GFF592 are separated by 7 nucleotides GFF588 - putative membrane protein, at 635,203 to 635,622 GFF588 GFF589 - Pirin, at 635,693 to 636,394 GFF589 GFF590 - Transcriptional regulator, LysR family, at 636,557 to 637,501 GFF590 GFF591 - Renalase (EC 1.6.3.5), oxidases 1,2-dihydro- and 1,6-dihydro- beta-NAD(P)H isomers back to NAD(P), at 637,621 to 638,721 GFF591 GFF592 - Glutamyl-Q tRNA(Asp) synthetase, at 638,729 to 639,631 GFF592
Group Condition GFF588 GFF589 GFF590 GFF591 GFF592
complex community Community=Locust bean gum; Passage=4 -0.1 +0.1 -0.6 -0.8 +0.1
complex community Community=Locust bean gum; Passage=4 -0.1 +0.0 -0.3 -0.5 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.1 -0.6 -0.2 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.1 -0.4 -0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 -0.0 -0.7 -0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 -0.1 -0.3 -0.2 -0.2
complex community Community=Locust bean gum; Passage=4 +0.1 +0.0 +0.5 -1.5 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.0 -0.1 -0.4 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.0 -0.3 -0.3 -0.0
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.0 -0.3 -0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.2 +0.1 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.1 -0.2 -0.3 -0.1
phage phage_bap4 +0.1 -0.0 -0.3 -0.3 +0.1
complex community Community=guar; Passage=4 +0.3 -0.0 -0.3 -0.8 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.2 -0.4 -0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.1 -0.4 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.2 -0.1 +0.0 -0.3
complex community Community=arabino-guar; Passage=4 -0.4 +0.3 +0.6 -1.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 +0.1 +0.2 -0.3 -0.2
complex community Community=arabino-guar; Passage=4 +0.4 -0.1 -0.8 +0.1 +0.2
phage phage_bap4 +0.5 +0.1 -0.6 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 +0.4 -0.1 -0.1
complex community Community=Locust bean gum; Passage=4 -0.5 -0.0 +0.1 +0.1 +0.7
phage phage_bap4 +0.5 +0.2 -0.3 +0.1 -0.0
phage phage_bap4 +0.3 -0.0 +0.2 -0.2 +0.1
no phage control no phage control +0.4 +0.1 +0.1 -0.1 -0.1
complex community Community=guar; Passage=4 -0.0 +0.1 +0.3 -0.1 +0.3
complex community Community=arabino-guar; Passage=4 +0.3 +0.0 +0.6 -0.3 +0.3
complex community Community=arabino-guar; Passage=4 +0.2 +0.2 +0.1 +0.1 +0.5
complex community Community=Kojac gum; Passage=4 -0.2 +0.0 +0.7 +0.1 +0.3
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