Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00290	PS417_00295	PS417_00300	PS417_00305	PS417_00310
soil	soil sample 5; outgrowth in LB	+0.1	-1.4	-2.4	-1.3	-1.0
soil	soil sample 2; outgrowth in LB	-0.2	-0.7	-1.2	-1.2	-2.5
soil	soil sample 6; outgrowth in LB	+0.4	-0.7	-1.2	-1.3	-1.7
soil	soil sample 8; outgrowth in LB	+0.0	-0.3	-1.4	-1.4	-1.3
soil	soil sample 7; outgrowth in LB	+0.1	-0.7	-1.0	-0.9	-1.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.3	-1.0	-0.8	-0.9	-1.2
root	root sample 6; outgrowth in LB	+0.3	-1.0	-0.8	-1.0	-1.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.5	-0.4	-1.5	-1.1	-0.9
soil	soil sample 4; outgrowth in LB	-0.5	-0.8	-1.2	-1.4	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.5	-1.0	-1.1	-0.5
soil	soil sample 3; outgrowth in LB	+0.2	-0.2	-0.9	-1.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.1	-0.3	-0.1	-0.7
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	+0.3	-0.3	-0.2	-2.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.1	+0.3	-0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.3	-0.3	+0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.4	-0.1	+0.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.8	-0.4	-0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.5	-0.7	-0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.1	-0.5	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.6	-0.6	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.8	+0.1	-0.7	-0.5
carbon source	Gly-Glu (C)	-0.3	-1.3	+0.1	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-1.6	+0.1	+0.2	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	+0.3	-0.4	-0.7	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	+0.0	-0.7	-0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.3	+0.3	+0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.2	-0.2	-0.0	+0.8
phage	P. simiae Grant Run MOI 10	+0.1	-1.4	-0.1	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-1.2	-0.0	+0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+0.4	+0.1	-0.0	-0.9