Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02980	PS417_02985	PS417_02990	PS417_02995	PS417_03000
solid stress	Fraxetin 3 mM; solid stress	+0.6	-0.1	-4.9	-0.4	-1.9
soil	soil sample 5; outgrowth in LB	-2.0	-0.0	-0.3	-0.5	-1.7
soil	soil sample 3; outgrowth in LB	-1.3	+0.6	-3.0	-0.4	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.6	-0.0	-0.7	+0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.7	+0.3	-0.2	-1.0	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.4	+0.2	-0.8	-1.7
soil	soil sample 7; outgrowth in LB	-3.0	+0.4	+0.5	-0.0	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	+0.2	-1.1	-0.4	-1.4
soil	soil sample 6; outgrowth in LB	+0.5	+0.2	-2.1	-0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.0	+0.5	-0.2	-0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	+1.7	-1.0	-0.5	-0.1
motility	inner cut, LB soft agar motility assay	-1.7	+0.4	+0.2	+0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+1.4	+0.3	-0.8	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	+1.6	-0.2	-0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.8	+0.7	+0.0	-0.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+1.4	+0.4	-0.0	-1.5
ecofab	LB in EcoFAB_3.5mL	+1.4	-1.1	-0.1	-0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+1.9	+0.2	-0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	+1.1	+0.1	-0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	+1.4	+0.3	+0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+1.5	-0.5	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	+0.8	+0.5	-0.9	-0.3
carbon source	L-Valine (C)	+1.9	+0.2	+0.4	-1.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	+1.3	-0.6	-0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.7	+0.3	+0.4	+0.5	-0.6
phage	P. simiae OR Antrim MOI 10	-0.6	+1.3	+1.3	+1.0	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+1.8	+0.5	+0.9	+0.2	-0.4
phage	P. simiae Grant Run MOI 10	+0.8	+1.3	+0.6	+0.4	+0.2
phage	P. simiae Grant Run MOI 10	+1.0	+1.7	+1.0	+0.5	-0.3
phage	JP1 MOI 10	+2.2	+1.3	+0.1	+0.8	-0.1