Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02970	PS417_02975	PS417_02980	PS417_02985	PS417_02990
soil	soil sample 3; outgrowth in LB	N.D.	-3.6	-1.3	+0.6	-3.0
soil	soil sample 5; outgrowth in LB	N.D.	-4.6	-2.0	-0.0	-0.3
soil	soil sample 7; outgrowth in LB	N.D.	-4.7	-3.0	+0.4	+0.5
soil	soil sample 4; outgrowth in LB	N.D.	-5.2	-0.4	+0.2	-1.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	-2.1	+0.6	-0.1	-4.9
soil	soil sample 6; outgrowth in LB	N.D.	-4.2	+0.5	+0.2	-2.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-3.8	-0.5	+0.1	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-1.9	-2.6	-0.0	-0.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-3.7	-0.7	-0.1	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-3.6	-1.5	+0.3	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.8	-1.5	-0.0	-0.3
soil	soil sample 2; outgrowth in LB	N.D.	-5.2	+0.0	+0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-2.4	-1.7	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.9	-2.0	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-2.3	-1.6	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.7	-0.8	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-3.4	+0.7	-0.1	-0.2
soil	soil sample 8; outgrowth in LB	N.D.	-3.6	+0.8	+0.5	-0.3
root	root sample 6; outgrowth in LB	N.D.	-3.1	-0.3	-0.3	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.3	-1.5	+1.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-2.2	+1.7	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.8	-1.0	+1.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.1	-0.4	+1.3	-0.8
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-3.7	+1.1	+0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.3	-0.4	+1.2	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.4	+0.0	+2.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.6	+1.1	+1.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.0	+1.7	+0.3	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-1.6	+1.8	+0.5	+0.9
phage	P. simiae Grant Run MOI 10	N.D.	+0.6	+1.0	+1.7	+1.0