Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5855 and GFF5856 are separated by 321 nucleotidesGFF5856 and GFF5857 are separated by 109 nucleotidesGFF5857 and GFF5858 overlap by 4 nucleotidesGFF5858 and GFF5859 are separated by 119 nucleotides GFF5855 - T1SS secreted agglutinin RTX, at 35,719 to 55,560 GFF5855 GFF5856 - Outer membrane receptor proteins, likely involved in siderophore uptake, at 55,882 to 58,413 GFF5856 GFF5857 - Fe2+-dicitrate sensor, membrane component, at 58,523 to 59,509 GFF5857 GFF5858 - heme uptake regulator, at 59,506 to 60,033 GFF5858 GFF5859 - KEGG: nickel transport system substrate-binding protein, at 60,153 to 60,905 GFF5859
Group Condition GFF5855 GFF5856 GFF5857 GFF5858 GFF5859
phage phage_bap4 -0.1 -0.1 +0.1 -0.3 -0.1
phage phage_bap4 -0.1 -0.2 +0.1 -0.2 -0.1
phage phage_bap4 -0.1 -0.2 +0.1 -0.0 -0.2
complex community Community=guar; Passage=4 +0.2 +0.1 -0.4 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.0 -0.2 -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.0 -0.1 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.0 -0.1 +0.0 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 -0.1 -0.2 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.1 -0.0 -0.2 +0.1
phage phage_bap4 -0.0 -0.0 +0.3 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.0 -0.1 -0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.0 -0.0 -0.0 -0.1 +0.2
phage phage_bap4 -0.1 -0.1 +0.2 +0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.0 -0.0 -0.2 +0.1
complex community Community=arabino-guar; Passage=4 +0.1 +0.1 +0.1 -0.5 +0.3
complex community Community=Locust bean gum; Passage=1 +0.1 +0.1 -0.0 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.0 -0.1 -0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 +0.0 -0.1 +0.1 +0.1
complex community Community=guar; Passage=4 +0.2 +0.1 -0.4 +0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.0 +0.2 +0.1 -0.1
complex community Community=arabino-guar; Passage=4 +0.2 +0.1 -0.3 -0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.0 +0.1 +0.1 +0.2
complex community Community=Kojac gum; Passage=1 +0.0 +0.1 +0.1 +0.0 +0.2
complex community Community=guar; Passage=4 +0.0 +0.1 +0.2 +0.2 +0.1
complex community Community=Locust bean gum; Passage=4 +0.1 +0.1 +0.1 +0.0 +0.1
complex community Community=Locust bean gum; Passage=4 +0.0 +0.2 +0.1 -0.0 +0.2
complex community Community=Locust bean gum; Passage=4 -0.0 +0.1 +0.5 +0.3 +0.0
complex community Community=Kojac gum; Passage=4 +0.1 +0.1 +0.2 +0.5 +0.1
complex community Community=arabino-guar; Passage=4 +0.1 +0.3 +0.2 +0.5 -0.0
complex community Community=guar; Passage=4 +0.1 +0.0 +0.5 +0.6 -0.0
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