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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5831 and GFF5832 are separated by 41 nucleotides
GFF5832 and GFF5833 are separated by 10 nucleotides
GFF5833 and GFF5834 are separated by 76 nucleotides
GFF5834 and GFF5835 are separated by 140 nucleotides
GFF5831 - Ketosteroid isomerase-related protein, at 7,790 to 8,179
GFF5831
GFF5832 - MoaF protein precursor, at 8,221 to 9,027
GFF5832
GFF5833 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 9,038 to 9,847
GFF5833
GFF5834 - Oxidoreductase, GMC family, at 9,924 to 11,525
GFF5834
GFF5835 - Uroporphyrinogen III decarboxylase (EC 4.1.1.37), at 11,666 to 12,775
GFF5835
Group
Condition
GFF5831
GFF5832
GFF5833
GFF5834
GFF5835
complex community
Community=Kojac gum; Passage=4
-3.4
+0.3
+0.5
+0.0
N.D.
complex community
Community=arabino-guar; Passage=4
-0.6
-0.1
-1.1
+0.0
N.D.
complex community
Community=guar; Passage=4
-1.9
-0.0
+0.2
+0.1
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
-1.4
+0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.2
+0.1
-0.2
N.D.
phage
phage_bap4
-0.8
+0.1
-0.1
+0.1
N.D.
phage
phage_bap4
-0.5
+0.2
-0.3
+0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.0
-0.6
+0.2
N.D.
phage
phage_bap4
+0.2
-0.1
-0.5
+0.0
N.D.
complex community
Community=guar; Passage=4
-0.4
+0.1
-0.2
+0.2
N.D.
no phage control
no phage control
+0.3
-0.2
-0.6
+0.2
N.D.
phage
phage_bap4
+0.3
-0.1
-0.4
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.0
-0.5
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
+0.0
-0.8
+0.2
N.D.
complex community
Community=Locust bean gum; Passage=1
-0.4
-0.0
+0.4
+0.1
N.D.
complex community
Community=guar; Passage=4
+0.3
-0.3
-0.3
+0.4
N.D.
complex community
Community=arabino-guar; Passage=4
-0.4
+0.3
+0.1
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.7
-0.4
-0.2
+0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.0
+0.5
+0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
+0.0
-0.3
+0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.1
+0.7
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.9
+0.0
-0.2
-0.0
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.5
-0.1
+0.3
+0.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.2
+0.4
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.6
+0.0
-0.0
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.4
-0.1
+0.4
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.8
-0.1
+0.0
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.9
+0.3
-0.2
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.4
+0.2
+0.3
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+1.0
+0.1
+0.4
+0.3
N.D.
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