Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF580 and GFF581 are separated by 22 nucleotidesGFF581 and GFF582 overlap by 44 nucleotidesGFF582 and GFF583 are separated by 156 nucleotidesGFF583 and GFF584 are separated by 4 nucleotides GFF580 - Rhodanese domain protein UPF0176, Betaproteobacterial subgroup, at 627,726 to 628,517 GFF580 GFF581 - Tricarboxylate transport transcriptional regulator TctD, at 628,540 to 629,250 GFF581 GFF582 - Two-component system sensor histidine kinase, at 629,207 to 630,754 GFF582 GFF583 - Tripartite tricarboxylate transporter TctB family, at 630,911 to 631,435 GFF583 GFF584 - Tripartite tricarboxylate transporter TctA family, at 631,440 to 633,014 GFF584
Group Condition GFF580 GFF581 GFF582 GFF583 GFF584
complex community Community=Locust bean gum; Passage=4 -1.2 +0.0 -0.5 -0.1 -0.6
complex community Community=arabino-guar; Passage=4 -1.4 +0.2 -0.3 +0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 -0.3 -0.1 -0.2 -0.2
complex community Community=arabino-guar; Passage=4 -1.0 -0.3 -0.0 +0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus -0.6 -0.2 +0.1 -0.1 -0.0
complex community Community=Locust bean gum; Passage=4 +0.3 -0.1 -0.3 -0.1 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 -0.6 +0.0 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 -0.2 -0.0 -0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.4 +0.1 +0.0 -0.1
complex community Community=guar; Passage=4 -0.8 -0.1 -0.6 +0.5 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.2 -0.2 +0.0 -0.0
complex community Community=Kojac gum; Passage=4 -0.2 +0.1 -0.4 +0.1 -0.1
complex community Community=Kojac gum; Passage=1 -0.4 -0.2 +0.1 +0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 -0.3 -0.1 +0.2 +0.1
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.3 -0.0 +0.2 -0.0
complex community Community=guar; Passage=4 -0.7 +0.4 -0.4 +0.3 +0.1
complex community Community=Locust bean gum; Passage=4 -0.4 +0.3 +0.1 -0.3 +0.1
complex community Community=guar; Passage=4 -0.2 -0.1 +0.3 -0.4 +0.1
phage phage_bap4 -0.5 +0.1 +0.0 +0.2 -0.0
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.4 -0.0 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.1 +0.2 -0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.1 +0.2 +0.2 -0.0
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.3 +0.1 +0.3 +0.1
complex community Community=Locust bean gum; Passage=4 -0.6 +0.7 -0.0 +0.0 -0.0
complex community Community=arabino-guar; Passage=4 +0.4 +0.1 -0.3 +0.1 -0.0
complex community Community=arabino-guar; Passage=4 +0.2 +0.4 -0.0 -0.2 -0.0
no phage control no phage control +0.2 -0.2 +0.0 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.4 -0.1 +0.1 +0.1
phage phage_bap4 -0.1 +0.1 +0.1 +0.2 +0.1
phage phage_bap4 +0.2 +0.4 -0.1 +0.1 +0.2
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