Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02945 and PS417_02950 overlap by 4 nucleotidesPS417_02950 and PS417_02955 are separated by 185 nucleotidesPS417_02955 and PS417_02960 are separated by 30 nucleotidesPS417_02960 and PS417_02965 are separated by 279 nucleotides PS417_02945: PS417_02945 - Fis family transcriptional regulator, at 673,946 to 674,266 _02945 PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276 _02950 PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676 _02955 PS417_02960: PS417_02960 - ribosomal protein L11 methyltransferase, at 676,707 to 677,585 _02960 PS417_02965: PS417_02965 - acetyl-CoA carboxylase, at 677,865 to 679,226 _02965
Group Condition PS417_02945 PS417_02950 PS417_02955 PS417_02960 PS417_02965
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.9 -2.0 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.9 -1.8 -0.7 N.D.
soil soil sample 4; outgrowth in LB N.D. -3.2 -0.9 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.1 +0.6 -0.5 N.D.
soil soil sample 8; outgrowth in LB N.D. -1.8 -0.8 -0.7 N.D.
soil soil sample 7; outgrowth in LB N.D. -0.9 -1.8 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.5 -0.5 -0.0 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -2.1 -0.2 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.1 -0.4 -0.4 N.D.
soil soil sample 5; outgrowth in LB N.D. -0.7 -1.5 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.6 -0.3 +0.2 N.D.
phage Wcs_1 N.D. -2.1 +0.5 -1.0 N.D.
soil soil sample 6; outgrowth in LB N.D. -0.9 -1.3 -0.3 N.D.
root root sample 6; outgrowth in LB N.D. -1.2 -0.7 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.9 -1.0 -0.4 N.D.
phage P. simiae Grant Run MOI 10 N.D. -2.0 +0.2 -0.4 N.D.
soil soil sample 3; outgrowth in LB N.D. -1.3 -1.1 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 +0.5 +0.2 N.D.
carbon source L-Valine (C) N.D. -1.7 -0.5 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.6 +0.2 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 +0.2 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.1 -0.9 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.5 +0.3 -0.5 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.0 +0.2 +0.3 N.D.
stress Choline chloride 300 mM N.D. -2.2 +0.9 +0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.8 +0.4 +0.3 N.D.
phage P. simiae Grant Run MOI 10 N.D. -0.8 +0.7 -1.0 N.D.
seeds Growth on radish seeds for 72 hours N.D. -1.3 +0.8 -0.4 N.D.
stress Cisplatin 0.01 mg/ml N.D. -1.4 +1.1 +0.2 N.D.
stress Doxycycline hyclate 0.001 mg/ml N.D. +1.4 -0.8 -0.3 N.D.
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