Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF579 and GFF580 are separated by 62 nucleotidesGFF580 and GFF581 are separated by 22 nucleotidesGFF581 and GFF582 overlap by 44 nucleotidesGFF582 and GFF583 are separated by 156 nucleotides GFF579 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 624,145 to 627,663 GFF579 GFF580 - Rhodanese domain protein UPF0176, Betaproteobacterial subgroup, at 627,726 to 628,517 GFF580 GFF581 - Tricarboxylate transport transcriptional regulator TctD, at 628,540 to 629,250 GFF581 GFF582 - Two-component system sensor histidine kinase, at 629,207 to 630,754 GFF582 GFF583 - Tripartite tricarboxylate transporter TctB family, at 630,911 to 631,435 GFF583
Group Condition GFF579 GFF580 GFF581 GFF582 GFF583
complex community Community=Locust bean gum; Passage=4 N.D. -1.2 +0.0 -0.5 -0.1
complex community Community=arabino-guar; Passage=4 N.D. -1.4 +0.2 -0.3 +0.1
complex community Community=guar; Passage=4 N.D. -0.8 -0.1 -0.6 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.4 -0.3 -0.1 -0.2
complex community Community=arabino-guar; Passage=4 N.D. -1.0 -0.3 -0.0 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.4 -0.6 +0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus N.D. -0.6 -0.2 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.4 -0.2 -0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.3 -0.2 -0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.5 -0.3 -0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.2 -0.4 +0.1 +0.0
complex community Community=Kojac gum; Passage=4 N.D. -0.2 +0.1 -0.4 +0.1
complex community Community=Kojac gum; Passage=1 N.D. -0.4 -0.2 +0.1 +0.0
complex community Community=guar; Passage=4 N.D. -0.7 +0.4 -0.4 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. -0.4 +0.3 +0.1 -0.3
complex community Community=guar; Passage=4 N.D. -0.2 -0.1 +0.3 -0.4
vitamin M9 with Supernatant from Cyptococcus N.D. -0.2 -0.3 -0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus N.D. +0.2 -0.4 -0.0 +0.0
phage phage_bap4 N.D. -0.5 +0.1 +0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus N.D. -0.3 -0.3 +0.1 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 -0.1 -0.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.3 +0.1 +0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.2 -0.1 +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. -0.6 +0.7 -0.0 +0.0
no phage control no phage control N.D. +0.2 -0.2 +0.0 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 +0.4 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.4 +0.1 -0.3 +0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.2 +0.4 -0.0 -0.2
complex community Community=guar; Passage=4 N.D. +0.0 +0.3 -0.2 +0.1
phage phage_bap4 N.D. +0.2 +0.4 -0.1 +0.1
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