Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF56 and GFF57 are separated by 67 nucleotidesGFF57 and GFF58 are separated by 93 nucleotidesGFF58 and GFF59 overlap by 4 nucleotidesGFF59 and GFF60 are separated by 66 nucleotides GFF56 - hypothetical protein, at 70,664 to 71,593 GFF56 GFF57 - Putative polysaccharide export protein YccZ precursor, at 71,661 to 72,872 GFF57 GFF58 - Tyrosine-protein kinase (EC 2.7.10.2), at 72,966 to 75,230 GFF58 GFF59 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 75,227 to 75,928 GFF59 GFF60 - GDP-L-fucose synthetase (EC 1.1.1.271), at 75,995 to 76,942 GFF60
Group Condition GFF56 GFF57 GFF58 GFF59 GFF60
complex community Community=guar; Passage=4 -0.9 -0.8 +0.2 -0.0 -0.1
complex community Community=guar; Passage=4 -0.5 -0.4 -0.3 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -1.2 -0.0 +0.1 +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.7 -0.0 +0.0 -0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.7 +0.1 -0.1 +0.0 -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.6 +0.1 -0.1 +0.1 +0.1
phage phage_bap4 -0.3 -0.1 +0.2 -0.1 -0.2
complex community Community=Locust bean gum; Passage=4 -1.3 -0.1 +0.1 +0.2 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 +0.3 -0.2 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.4 +0.2 -0.1 -0.0 +0.2
complex community Community=arabino-guar; Passage=4 -1.0 -0.0 +0.2 +0.2 +0.5
vitamin M9 with Supernatant from Cyptococcus -0.4 +0.2 +0.0 -0.1 +0.1
phage phage_bap4 -0.4 -0.0 -0.0 +0.1 +0.3
complex community Community=arabino-guar; Passage=4 -0.7 -0.3 +0.3 +0.5 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.3 -0.2 -0.1 +0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.1 +0.0 +0.3 +0.1
no phage control no phage control +0.3 +0.1 +0.1 -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.4 -0.2 -0.0 +0.1 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.5 -0.0 +0.0 -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.7 -0.2 -0.1 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.4 -0.0 +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 +0.7 +0.1 -0.1 +0.1 -0.2
phage phage_bap4 +0.6 +0.0 -0.1 -0.0 +0.1
complex community Community=guar; Passage=4 -0.3 +0.5 -0.2 +0.1 +0.5
phage phage_bap4 +0.4 +0.2 +0.1 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 +0.2 +0.1 -0.0 +0.2
complex community Community=Locust bean gum; Passage=4 +1.3 +0.1 -0.1 -0.0 +0.2
complex community Community=Locust bean gum; Passage=4 +1.6 -0.3 +0.3 -0.2 +0.2
complex community Community=arabino-guar; Passage=4 +1.2 +0.2 +0.4 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.6 +0.4 +0.1 +0.4 +0.4
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