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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF56 and GFF57 are separated by 67 nucleotides
GFF57 and GFF58 are separated by 93 nucleotides
GFF58 and GFF59 overlap by 4 nucleotides
GFF59 and GFF60 are separated by 66 nucleotides
GFF56 - hypothetical protein, at 70,664 to 71,593
GFF56
GFF57 - Putative polysaccharide export protein YccZ precursor, at 71,661 to 72,872
GFF57
GFF58 - Tyrosine-protein kinase (EC 2.7.10.2), at 72,966 to 75,230
GFF58
GFF59 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 75,227 to 75,928
GFF59
GFF60 - GDP-L-fucose synthetase (EC 1.1.1.271), at 75,995 to 76,942
GFF60
Group
Condition
GFF56
GFF57
GFF58
GFF59
GFF60
complex community
Community=guar; Passage=4
-0.9
-0.8
+0.2
-0.0
-0.1
complex community
Community=guar; Passage=4
-0.5
-0.4
-0.3
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.2
-0.0
+0.1
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.7
-0.0
+0.0
-0.3
-0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.7
+0.1
-0.1
+0.0
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
+0.1
-0.1
+0.1
+0.1
phage
phage_bap4
-0.3
-0.1
+0.2
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
-1.3
-0.1
+0.1
+0.2
+0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.3
-0.2
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.4
+0.2
-0.1
-0.0
+0.2
complex community
Community=arabino-guar; Passage=4
-1.0
-0.0
+0.2
+0.2
+0.5
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.2
+0.0
-0.1
+0.1
phage
phage_bap4
-0.4
-0.0
-0.0
+0.1
+0.3
complex community
Community=arabino-guar; Passage=4
-0.7
-0.3
+0.3
+0.5
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.2
-0.1
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.1
+0.0
+0.3
+0.1
no phage control
no phage control
+0.3
+0.1
+0.1
-0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
-0.2
-0.0
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.5
-0.0
+0.0
-0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.7
-0.2
-0.1
+0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.4
-0.0
+0.2
+0.2
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.1
-0.1
+0.1
-0.2
phage
phage_bap4
+0.6
+0.0
-0.1
-0.0
+0.1
complex community
Community=guar; Passage=4
-0.3
+0.5
-0.2
+0.1
+0.5
phage
phage_bap4
+0.4
+0.2
+0.1
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
+0.2
+0.1
-0.0
+0.2
complex community
Community=Locust bean gum; Passage=4
+1.3
+0.1
-0.1
-0.0
+0.2
complex community
Community=Locust bean gum; Passage=4
+1.6
-0.3
+0.3
-0.2
+0.2
complex community
Community=arabino-guar; Passage=4
+1.2
+0.2
+0.4
-0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.6
+0.4
+0.1
+0.4
+0.4
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