Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02920 and PS417_02925 overlap by 4 nucleotidesPS417_02925 and PS417_02930 are separated by 163 nucleotidesPS417_02930 and PS417_02935 are separated by 100 nucleotidesPS417_02935 and PS417_02940 are separated by 174 nucleotides PS417_02920: PS417_02920 - hypothetical protein, at 666,381 to 667,160 _02920 PS417_02925: PS417_02925 - membrane protein, at 667,157 to 667,753 _02925 PS417_02930: PS417_02930 - histidine kinase, at 667,917 to 670,688 _02930 PS417_02935: PS417_02935 - phosphoribosylamine--glycine ligase, at 670,789 to 672,081 _02935 PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863 _02940
Group Condition PS417_02920 PS417_02925 PS417_02930 PS417_02935 PS417_02940
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 -0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 -1.0 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -1.1 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 -0.6 N.D. N.D. N.D.
phage P. simiae ORA MOI 10 -0.6 -0.2 N.D. N.D. N.D.
carbon source L-Leucine (C) +0.0 -0.8 N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay -0.4 -0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 -0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.2 -0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 -0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.4 N.D. N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) +0.5 -0.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 -0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.6 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.6 N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB -0.2 +0.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 -0.2 N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.7 +0.1 N.D. N.D. N.D.
root root sample 6; outgrowth in LB +0.1 +0.7 N.D. N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.0 +0.8 N.D. N.D. N.D.
carbon source RCH2_defined_glucose with MS_media 1x +0.0 +0.7 N.D. N.D. N.D.
soil soil sample 4; outgrowth in LB +0.5 +0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 +0.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.6 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.6 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +0.7 N.D. N.D. N.D.
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