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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF573 and GFF574 overlap by 4 nucleotides
GFF574 and GFF575 overlap by 4 nucleotides
GFF575 and GFF576 are separated by 15 nucleotides
GFF576 and GFF577 are separated by 3 nucleotides
GFF573 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 618,549 to 619,745
GFF573
GFF574 - Tol-Pal system-associated acyl-CoA thioesterase, at 619,742 to 620,200
GFF574
GFF575 - Tol-Pal system protein TolQ, at 620,197 to 620,919
GFF575
GFF576 - Tol biopolymer transport system, TolR protein, at 620,935 to 621,372
GFF576
GFF577 - TolA protein, at 621,376 to 622,299
GFF577
Group
Condition
GFF573
GFF574
GFF575
GFF576
GFF577
complex community
Community=arabino-guar; Passage=4
-0.2
-0.2
-3.7
-4.6
-4.6
complex community
Community=guar; Passage=4
-0.1
-0.3
-3.8
-4.5
-4.5
complex community
Community=arabino-guar; Passage=4
-0.3
-0.0
-3.7
-4.3
-4.3
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.1
-3.7
-4.3
-4.3
complex community
Community=guar; Passage=4
+0.1
+0.1
-3.8
-4.4
-4.4
complex community
Community=guar; Passage=4
-0.4
-0.2
-3.5
-4.2
-4.2
complex community
Community=arabino-guar; Passage=4
+0.0
-0.1
-3.7
-4.3
-4.3
complex community
Community=arabino-guar; Passage=4
-0.0
+0.0
-3.7
-4.3
-4.3
complex community
Community=Kojac gum; Passage=4
-0.2
+0.3
-3.6
-4.2
-4.2
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.4
-3.6
-4.2
-3.5
complex community
Community=Locust bean gum; Passage=4
-0.5
+0.2
-3.4
-4.0
-4.0
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.3
-3.5
-4.1
-4.1
complex community
Community=guar; Passage=4
+0.1
+0.2
-3.6
-3.2
-4.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.0
-1.4
-1.4
-4.3
vitamin
M9 with Supernatant from Cyptococcus
-0.5
-0.2
-2.3
-2.0
-1.7
phage
phage_bap4
-0.1
+0.0
-1.8
-1.9
-2.8
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
+0.1
-1.1
-1.8
-3.7
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.1
-2.1
-1.4
-2.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.0
-1.3
-1.1
-3.5
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.0
-1.6
-1.8
-2.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.1
-0.8
-1.3
-3.8
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.2
-1.5
-1.5
-2.5
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.0
-1.7
-2.2
-1.3
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.1
-1.5
-1.6
-2.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.0
-1.4
-2.3
-1.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.1
-1.5
-1.7
-1.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.0
-1.3
-2.2
-1.4
phage
phage_bap4
-0.1
+0.1
-1.4
-1.2
-2.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.0
-1.3
-1.1
-2.4
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.0
-1.6
-1.5
-1.6
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