Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02910 and PS417_02915 overlap by 1 nucleotidesPS417_02915 and PS417_02920 are separated by 236 nucleotidesPS417_02920 and PS417_02925 overlap by 4 nucleotidesPS417_02925 and PS417_02930 are separated by 163 nucleotides PS417_02910: PS417_02910 - precorrin-2 C20-methyltransferase, at 663,776 to 664,507 _02910 PS417_02915: PS417_02915 - precorrin-3B C17-methyltransferase, at 664,507 to 666,144 _02915 PS417_02920: PS417_02920 - hypothetical protein, at 666,381 to 667,160 _02920 PS417_02925: PS417_02925 - membrane protein, at 667,157 to 667,753 _02925 PS417_02930: PS417_02930 - histidine kinase, at 667,917 to 670,688 _02930
Group Condition PS417_02910 PS417_02915 PS417_02920 PS417_02925 PS417_02930
nitrogen source Adenosine (N) -1.8 -2.3 +0.1 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -1.3 +0.0 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -2.2 -0.2 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.0 -0.3 -0.4 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 -1.2 +0.1 -0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.8 +0.2 -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.6 -0.3 -0.2 N.D.
phage P. simiae OR1 MOI 0.1 -1.2 -1.0 +0.1 +0.2 N.D.
supernatant control Vogels_fungal_media 0.1X -0.5 -1.3 -0.1 -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.7 -1.2 +0.1 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.0 -0.8 +0.0 -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -0.8 -0.0 -0.3 N.D.
phage P. simiae ORA MOI 0.1 -0.0 -1.1 -0.3 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -1.0 +0.3 -0.3 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.8 -0.3 +0.1 N.D.
soil soil sample 5; outgrowth in LB -0.2 -1.4 +0.2 +0.1 N.D.
phage Wcs_0.1 -0.6 -1.1 +0.1 +0.3 N.D.
supernatant control Vogels_fungal_media 0.1X -0.5 -1.0 -0.0 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -1.2 -0.1 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 -1.0 +0.3 -0.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.7 +0.6 -0.4 N.D.
soil soil sample 7; outgrowth in LB -1.2 -0.2 -0.2 +0.6 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -0.6 +0.5 +0.2 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 -1.0 +0.3 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.9 +0.7 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.4 +0.3 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -1.0 -0.5 +0.3 N.D.
root root sample 6; outgrowth in LB -0.5 +0.7 +0.1 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.7 +0.8 +0.7 N.D.
nitrogen source Glycine (N) +3.1 +2.6 -0.0 -0.1 N.D.
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