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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5715 and GFF5716 are separated by 3 nucleotides
GFF5716 and GFF5717 are separated by 22 nucleotides
GFF5717 and GFF5718 are separated by 68 nucleotides
GFF5718 and GFF5719 are separated by 43 nucleotides
GFF5715 - Flagellar basal-body rod protein FlgB, at 85,945 to 86,352
GFF5715
GFF5716 - Flagellar basal-body rod protein FlgC, at 86,356 to 86,772
GFF5716
GFF5717 - Flagellar basal-body rod modification protein FlgD, at 86,795 to 87,475
GFF5717
GFF5718 - Flagellar hook protein FlgE, at 87,544 to 88,764
GFF5718
GFF5719 - Flagellar basal-body rod protein FlgF, at 88,808 to 89,554
GFF5719
Group
Condition
GFF5715
GFF5716
GFF5717
GFF5718
GFF5719
complex community
Community=Locust bean gum; Passage=4
-1.0
-0.4
N.D.
+0.4
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.6
N.D.
+0.0
N.D.
complex community
Community=arabino-guar; Passage=4
-0.5
-0.3
N.D.
+0.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.3
N.D.
-0.3
N.D.
complex community
Community=arabino-guar; Passage=4
-0.5
-0.3
N.D.
+0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
+0.5
N.D.
-0.0
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.2
N.D.
+0.2
N.D.
complex community
Community=Kojac gum; Passage=4
-0.7
+0.5
N.D.
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
-0.6
N.D.
+0.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
+0.3
N.D.
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.8
+0.1
N.D.
+0.8
N.D.
complex community
Community=guar; Passage=4
+0.4
-0.5
N.D.
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.4
+0.5
N.D.
+0.0
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.7
-0.3
N.D.
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.4
N.D.
+0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.6
N.D.
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.3
N.D.
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.5
+0.1
N.D.
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.4
N.D.
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.2
N.D.
+0.2
N.D.
complex community
Community=guar; Passage=4
+0.2
-0.0
N.D.
+0.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.2
N.D.
+0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.3
N.D.
+0.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.4
N.D.
+0.2
N.D.
phage
phage_bap4
+0.6
+0.3
N.D.
+0.0
N.D.
complex community
Community=guar; Passage=4
+0.2
+0.9
N.D.
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
+0.3
N.D.
+0.2
N.D.
phage
phage_bap4
+0.4
+0.3
N.D.
+0.3
N.D.
phage
phage_bap4
+0.5
+0.3
N.D.
+0.3
N.D.
phage
phage_bap4
+1.1
+0.4
N.D.
+0.3
N.D.
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