Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5688 and GFF5689 overlap by 25 nucleotidesGFF5689 and GFF5690 overlap by 4 nucleotidesGFF5690 and GFF5691 overlap by 4 nucleotidesGFF5691 and GFF5692 are separated by 157 nucleotides GFF5688 - Transcriptional regulator, LysR family, at 63,422 to 64,345 GFF5688 GFF5689 - Oxidoreductase, 2OG-Fe(II) oxygenase family, at 64,321 to 65,322 GFF5689 GFF5690 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 65,319 to 66,062 GFF5690 GFF5691 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 66,059 to 66,769 GFF5691 GFF5692 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 66,927 to 67,622 GFF5692
Group Condition GFF5688 GFF5689 GFF5690 GFF5691 GFF5692
complex community Community=guar; Passage=4 -1.6 +0.1 +0.4 -0.2 -0.2
complex community Community=Locust bean gum; Passage=4 -1.2 -0.9 +0.4 -0.1 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.9 -0.2 +0.0 -0.1 +0.1
complex community Community=Kojac gum; Passage=1 -0.6 -0.0 -0.3 -0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -1.1 +0.2 -0.4 +0.0 +0.2
complex community Community=guar; Passage=4 -0.2 -0.0 -0.7 -0.2 +0.2
phage phage_bap4 -0.3 -0.0 -0.5 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 -0.1 -0.8 -0.1 -0.2
complex community Community=arabino-guar; Passage=4 +0.7 -0.3 -1.2 -0.2 +0.3
complex community Community=arabino-guar; Passage=4 +0.8 -0.3 -0.8 -0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.1 -0.5 +0.1 +0.1
complex community Community=guar; Passage=4 -0.3 +0.2 -0.9 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.2 -1.2 +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 +0.3 -0.3 -0.9 +0.2 +0.4
no phage control no phage control -0.5 +0.1 +0.2 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.0 -0.7 +0.3 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.6 +0.2 +0.3 -0.0 +0.1
no phage control no phage control -0.2 -0.2 +0.4 -0.1 +0.0
no phage control no phage control -0.4 +0.1 +0.3 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 -0.1 -0.3 +0.1 -0.1 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.3 +0.2 -0.4 -0.0 +0.1
phage phage_bap4 +0.4 -0.1 +0.3 -0.2 -0.0
complex community Community=guar; Passage=4 +0.7 +0.2 -0.3 -0.2 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.7 -0.0 -0.2 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.6 -0.1 -0.2 +0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.4 +0.2 +0.2 -0.2 -0.1
phage phage_bap4 +0.5 -0.1 +0.3 -0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL +0.5 +0.2 +0.1 +0.1 -0.1
complex community Community=Locust bean gum; Passage=4 +0.5 -0.1 +0.4 +0.2 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.8 -0.0 +0.1 +0.1 +0.1
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