Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02885 and PS417_02890 are separated by 262 nucleotidesPS417_02890 and PS417_02895 overlap by 4 nucleotidesPS417_02895 and PS417_02900 are separated by 38 nucleotidesPS417_02900 and PS417_02905 overlap by 8 nucleotides PS417_02885: PS417_02885 - hypothetical protein, at 659,193 to 659,588 _02885 PS417_02890: PS417_02890 - cobalt-precorrin-6X reductase, at 659,851 to 660,570 _02890 PS417_02895: PS417_02895 - precorrin-6Y C5,15-methyltransferase, at 660,567 to 661,772 _02895 PS417_02900: PS417_02900 - oxidoreductase, at 661,811 to 663,157 _02900 PS417_02905: PS417_02905 - precorrin isomerase, at 663,150 to 663,776 _02905
Group Condition PS417_02885 PS417_02890 PS417_02895 PS417_02900 PS417_02905
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 -0.9 -4.2 N.D. N.D.
soil soil sample 5; outgrowth in LB -0.1 +0.4 -5.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -3.0 -0.0 -1.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.5 -3.1 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.4 -2.8 N.D. N.D.
temperature LB_noSalt 30C -3.1 -0.3 -0.2 N.D. N.D.
soil soil sample 3; outgrowth in LB +0.6 -0.2 -3.7 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.1 -1.3 -0.8 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 -0.5 -1.3 N.D. N.D.
nitrogen source Adenosine (N) +0.4 -1.8 -1.7 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.4 -1.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 -0.4 -1.1 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.2 -1.9 N.D. N.D.
root root sample 6; outgrowth in LB -0.1 -1.8 -0.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 -0.9 -2.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.5 -1.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +0.2 -3.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.5 -1.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 -0.4 -2.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -1.1 +0.6 N.D. N.D.
phage JP1 MOI 10 +0.1 +0.7 -2.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.4 +1.4 -0.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.4 -0.2 +1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 -1.6 +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +0.5 -1.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 -1.0 -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.4 +0.1 -1.1 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +1.0 +0.7 -0.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.8 +3.4 N.D. N.D.
nitrogen source Glycine (N) +0.2 +2.6 +3.1 N.D. N.D.
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