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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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500 nt
GFF5686 and GFF5687 overlap by 8 nucleotides
GFF5687 and GFF5688 are separated by 115 nucleotides
GFF5688 and GFF5689 overlap by 25 nucleotides
GFF5689 and GFF5690 overlap by 4 nucleotides
GFF5686 - FIG01027227: hypothetical protein, at 62,361 to 62,759
GFF5686
GFF5687 - FIG01027591: hypothetical protein, at 62,752 to 63,306
GFF5687
GFF5688 - Transcriptional regulator, LysR family, at 63,422 to 64,345
GFF5688
GFF5689 - Oxidoreductase, 2OG-Fe(II) oxygenase family, at 64,321 to 65,322
GFF5689
GFF5690 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 65,319 to 66,062
GFF5690
Group
Condition
GFF5686
GFF5687
GFF5688
GFF5689
GFF5690
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.1
-1.2
-0.9
+0.4
phage
phage_bap4
-0.2
-0.5
-0.3
-0.0
-0.5
complex community
Community=guar; Passage=4
-0.4
+0.1
-0.3
+0.2
-0.9
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.1
+0.3
-0.3
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.5
-0.5
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.2
-0.1
-0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.1
-0.9
-0.2
+0.0
complex community
Community=arabino-guar; Passage=4
-0.4
-0.3
-0.1
-0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.2
-0.3
-0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
+0.1
-1.1
+0.2
-0.4
complex community
Community=Kojac gum; Passage=1
-0.1
+0.3
-0.6
-0.0
-0.3
complex community
Community=guar; Passage=4
+0.1
+0.2
-0.2
-0.0
-0.7
complex community
Community=guar; Passage=4
+0.3
+0.4
-1.6
+0.1
+0.4
complex community
Community=arabino-guar; Passage=4
+0.0
+0.2
+0.7
-0.3
-1.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.2
+0.2
+0.2
-1.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.2
+0.4
-0.1
-0.8
no phage control
no phage control
-0.3
+0.2
-0.5
+0.1
+0.2
no phage control
no phage control
-0.4
+0.1
-0.4
+0.1
+0.3
phage
phage_bap4
-0.4
-0.4
+0.4
-0.1
+0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.1
-0.6
+0.2
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.1
+0.6
-0.1
-0.2
phage
phage_bap4
-0.3
-0.2
+0.5
-0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.1
+0.5
-0.1
+0.4
complex community
Community=Locust bean gum; Passage=4
-0.5
+1.1
+0.0
-0.3
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.5
-0.2
+0.4
-0.1
-0.0
complex community
Community=Kojac gum; Passage=4
+0.2
+1.0
-0.1
-0.0
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.4
+0.8
-0.0
+0.1
complex community
Community=arabino-guar; Passage=4
+0.4
+1.2
+0.8
-0.3
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
+0.3
+0.6
-0.0
+0.2
complex community
Community=guar; Passage=4
+0.6
+0.7
+0.7
+0.2
-0.3
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