Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF5656 and GFF5657 are separated by 54 nucleotidesGFF5657 and GFF5658 overlap by 4 nucleotidesGFF5658 and GFF5659 overlap by 1 nucleotidesGFF5659 and GFF5660 overlap by 4 nucleotides GFF5656 - Transcriptional regulator, TetR family, at 2,679,102 to 2,679,716 GFF5656 GFF5657 - Mesaconyl-CoA C1-C4 CoA transferase, at 2,679,771 to 2,680,982 GFF5657 GFF5658 - Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007), at 2,680,979 to 2,682,649 GFF5658 GFF5659 - Phytoene dehydrogenase and related proteins, at 2,682,649 to 2,683,971 GFF5659 GFF5660 - Citrate lyase beta chain (EC 4.1.3.6), at 2,683,968 to 2,684,870 GFF5660
Group Condition GFF5656 GFF5657 GFF5658 GFF5659 GFF5660
carbon source Ying_AminoAcid20 rep A; time point 1 -0.5 -0.2 -0.5 -0.2 N.D.
carbon source Ying_Nucleobase14 rep C; time point 1 -0.9 -0.6 +0.8 -0.3 N.D.
carbon source Ying_Nucleobase14 rep B; time point 1 -0.7 +0.0 -0.2 -0.1 N.D.
carbon source Ying_AminoAcid20 rep B; time point 2 -0.4 -0.2 +0.3 -0.2 N.D.
carbon source Ying_AminoAcid20 rep C; time point 2 -0.3 -0.6 +0.4 +0.0 N.D.
carbon source Ying_AminoAcid20 rep A; time point 2 -0.2 -0.2 +0.3 -0.3 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 2 -0.2 -0.5 +0.3 -0.0 N.D.
carbon source Ying_sugar7 rep A; time point 1 -0.2 -0.3 +0.3 -0.2 N.D.
carbon source Ying_all64 rep B; time point 3 +0.2 -0.5 +0.3 -0.4 N.D.
carbon source Ying_Others16 rep C; time point 1 -0.6 -0.2 +0.6 -0.1 N.D.
carbon source Ying_AminoAcid20 rep C; time point 3 +0.0 -0.6 +0.7 -0.2 N.D.
carbon source Ying_all64 rep C; time point 2 -0.6 +0.3 -0.0 +0.3 N.D.
carbon source Ying_AminoAcid20 rep A; time point 3 +0.2 -0.3 +0.5 -0.2 N.D.
carbon source Ying_OrganicAcid7 rep A; time point 1 -0.2 -0.2 +0.4 +0.3 N.D.
carbon source Ying_sugar7 rep C; time point 2 +0.5 -0.4 +0.6 -0.2 N.D.
carbon source Ying_AminoAcid20 rep C; time point 1 +0.5 -0.3 +0.1 +0.1 N.D.
carbon source Ying_all64 rep C; time point 1 +0.0 +0.2 +0.4 -0.2 N.D.
carbon source Ying_sugar7 rep C; time point 3 +0.2 -0.4 +0.4 +0.1 N.D.
carbon source Ying_Others16 rep A; time point 3 +0.4 -0.4 +0.5 -0.1 N.D.
carbon source Ying_AminoAcid20 rep B; time point 1 -0.3 +0.2 +0.5 +0.0 N.D.
carbon source Ying_Others16 rep B; time point 3 +0.4 -0.1 +0.4 -0.2 N.D.
carbon source Ying_Others16 rep C; time point 3 +0.2 -0.3 +0.6 -0.0 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.2 -0.2 +0.6 +0.0 N.D.
carbon source Ying_AminoAcid20 rep B; time point 3 +0.7 -0.1 +0.5 -0.3 N.D.
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.5 -0.3 +0.6 +0.0 N.D.
carbon source Ying_sugar7 rep B; time point 3 +0.6 -0.4 +0.8 -0.2 N.D.
carbon source Ying_all64 rep A; time point 1 +0.3 +0.0 +0.5 +0.2 N.D.
carbon source Ying_all64 rep A; time point 3 +0.6 -0.3 +0.6 +0.2 N.D.
carbon source Ying_Others16 rep A; time point 2 +0.2 -0.0 +1.0 +0.0 N.D.
carbon source Ying_all64 rep C; time point 3 +0.3 +0.5 +1.0 +0.1 N.D.
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