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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5637 and GFF5638 are separated by 34 nucleotides
GFF5638 and GFF5639 overlap by 4 nucleotides
GFF5639 and GFF5640 are separated by 123 nucleotides
GFF5640 and GFF5641 overlap by 4 nucleotides
GFF5637 - Molybdenum ABC transporter ATP-binding protein ModC, at 12,944 to 13,732
GFF5637
GFF5638 - no description, at 13,767 to 14,048
GFF5638
GFF5639 - Death on curing protein, Doc toxin, at 14,045 to 14,359
GFF5639
GFF5640 - Putative formate dehydrogenase oxidoreductase protein, at 14,483 to 16,831
GFF5640
GFF5641 - Formate dehydrogenase chain D (EC 1.2.1.2), at 16,828 to 17,118
GFF5641
Group
Condition
GFF5637
GFF5638
GFF5639
GFF5640
GFF5641
complex community
Community=Locust bean gum; Passage=4
-0.1
N.D.
-0.8
-0.1
N.D.
complex community
Community=guar; Passage=4
-0.3
N.D.
-0.2
-0.1
N.D.
phage
phage_bap4
-0.2
N.D.
-0.3
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
N.D.
+0.0
-0.5
N.D.
complex community
Community=arabino-guar; Passage=4
-0.1
N.D.
-0.2
-0.2
N.D.
phage
phage_bap4
-0.2
N.D.
-0.2
-0.1
N.D.
complex community
Community=Locust bean gum; Passage=1
-0.2
N.D.
-0.1
-0.1
N.D.
complex community
Community=Kojac gum; Passage=4
+0.1
N.D.
-0.3
-0.2
N.D.
phage
phage_bap4
-0.2
N.D.
-0.2
-0.0
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.3
N.D.
+0.0
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
N.D.
-0.1
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.4
N.D.
+0.0
+0.1
N.D.
phage
phage_bap4
-0.2
N.D.
+0.0
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
N.D.
-0.1
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.0
N.D.
-0.2
-0.0
N.D.
complex community
Community=guar; Passage=4
+0.1
N.D.
-0.1
-0.1
N.D.
complex community
Community=Kojac gum; Passage=1
-0.0
N.D.
+0.1
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
N.D.
+0.1
-0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.1
N.D.
+0.2
-0.2
N.D.
complex community
Community=arabino-guar; Passage=4
-0.2
N.D.
+0.3
-0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
N.D.
+0.2
-0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
N.D.
+0.4
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
N.D.
+0.2
-0.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
N.D.
+0.2
-0.1
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.1
N.D.
+0.1
-0.1
N.D.
complex community
Community=arabino-guar; Passage=4
-0.0
N.D.
+0.3
-0.3
N.D.
complex community
Community=guar; Passage=4
+0.5
N.D.
-0.1
-0.4
N.D.
complex community
Community=guar; Passage=4
+0.5
N.D.
-0.2
-0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
N.D.
+0.3
-0.1
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
N.D.
+0.2
-0.0
N.D.
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