Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_28435 and PS417_28440 are separated by 36 nucleotidesPS417_28440 and PS417_28445 are separated by 60 nucleotidesPS417_28445 and PS417_28450 are separated by 10 nucleotidesPS417_28450 and PS417_28455 are separated by 228 nucleotides PS417_28435: PS417_28435 - penicillin-binding protein, at 6,141,580 to 6,143,877 _28435 PS417_28440: PS417_28440 - hypothetical protein, at 6,143,914 to 6,144,279 _28440 PS417_28445: PS417_28445 - glucosamine--fructose-6-phosphate aminotransferase, at 6,144,340 to 6,146,172 _28445 PS417_28450: PS417_28450 - XRE family transcriptional regulator, at 6,146,183 to 6,146,950 _28450 PS417_28455: PS417_28455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 6,147,179 to 6,148,546 _28455
Group Condition PS417_28435 PS417_28440 PS417_28445 PS417_28450 PS417_28455
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 N.D. -4.0 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.2 N.D. -3.2 N.D.
phage Wcs_1 -0.3 -0.5 N.D. -1.8 N.D.
root root sample 6; outgrowth in LB +0.2 -0.2 N.D. -2.0 N.D.
seeds Growth on radish seeds for 72 hours -0.1 -1.1 N.D. -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.6 N.D. -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.3 N.D. -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -0.3 N.D. -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -0.4 N.D. -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.3 N.D. -1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 -0.5 N.D. -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.6 N.D. -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.4 N.D. -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.4 N.D. -1.0 N.D.
soil soil sample 2; outgrowth in LB -0.1 +0.5 N.D. -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +0.6 N.D. -1.1 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -0.6 N.D. +0.8 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.2 -0.3 N.D. +1.1 N.D.
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.3 -0.4 N.D. +1.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.2 -0.4 N.D. +1.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.2 -0.4 N.D. +1.5 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.0 -0.2 N.D. +1.3 N.D.
phage P. simiae OR Antrim MOI 10 +0.2 -0.3 N.D. +1.3 N.D.
phage JP1 MOI 0.1 -0.2 +0.2 N.D. +1.2 N.D.
stress Cisplatin 0.01 mg/ml -0.0 -0.2 N.D. +1.4 N.D.
stress Thallium(I) acetate 0.0625 mg/ml -0.1 +1.1 N.D. +0.4 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.1 +0.2 N.D. +1.5 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.0 +0.1 N.D. +1.5 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.1 +0.6 N.D. +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.5 N.D. +1.5 N.D.
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