Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28420	PS417_28425	PS417_28430	PS417_28435	PS417_28440
nophagecontrol	TIme6-nophage	N.D.	-0.6	-0.1	-0.1	-0.5
seeds	Growth on radish seeds for 72 hours	N.D.	+0.1	-0.3	-0.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.1	+0.1	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	+0.1	+0.1	-0.6
phage	P. simiae OR Antrim MOI 10	N.D.	-1.0	+0.1	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	-0.1	+0.1	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.1	-0.0	+0.1	-0.9
soil	soil sample 7; outgrowth in LB	N.D.	-0.4	+0.0	+0.2	-0.7
soil	soil sample 5; outgrowth in LB	N.D.	-0.4	-0.0	+0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.1	+0.1	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	-0.1	+0.2	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.8	+0.1	+0.0	+0.3
phage	P. simiae Grant Run MOI 0.1	N.D.	-0.7	+0.0	-0.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.7	+0.2	+0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-0.1	-0.3	+0.6
phage	P. simiae ORA MOI 1	N.D.	-0.6	+0.1	-0.2	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.8	+0.1	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.6	-0.0	+0.3	+0.4
phage	P. simiae OR1 MOI 0.1	N.D.	+0.2	-0.0	-0.5	+0.5
carbon source	L-Valine (C)	N.D.	-0.4	+0.1	-0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.5	+0.1	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.7	+0.0	+0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.8	+0.0	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.0	+0.2	+0.9
stress	Thallium(I) acetate 0.0625 mg/ml	N.D.	-0.2	-0.1	-0.1	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+1.2	-0.1	-0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.1	-0.2	+0.9
seeds	Growth on radish seeds for 24 hours	N.D.	+0.8	-0.0	-0.1	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.1	+0.1	+0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+1.2	-0.0	-0.0	-0.1