Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28395	PS417_28400	PS417_28405	PS417_28410	PS417_28415
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	-0.2	-1.1	-0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.2	-1.2	-0.3	+0.0
seeds	Growth on radish seeds for 72 hours	-0.3	-0.2	-0.0	-0.8	-0.3
phage	JP1 MOI 1	-0.0	+0.3	-1.7	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.2	-1.0	-0.2	+0.1
phage	Wcs_1	-0.1	+0.1	-1.2	+0.1	-0.2
seeds	Growth on radish seeds for 72 hours	-0.4	-0.1	-1.0	-0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.5	-0.8	-0.1	+0.2
soil	soil sample 5; outgrowth in LB	-0.2	+0.2	-0.7	-0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.5	-0.6	+0.3	-0.2
phage	JP1 MOI 1	-0.2	-0.3	-0.7	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.3	-0.5	-0.4	-0.3
stress	R2A with Fusaric 120 ug/mL	+0.0	-0.5	-0.7	+0.4	+0.1
stress	R2A with Fusaric 120 ug/mL	+0.1	-0.9	-0.2	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.5	-0.3	+0.3	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.0	-0.6	+0.6	-0.2
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.0	-0.2	-0.9	+0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.0	-1.3	+0.3	+0.4
stress	R2A with Fusaric 120 ug/mL	+0.1	-0.7	-0.4	+0.4	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	+0.1	+0.8	-0.2	-0.4
stress	R2A with Fusaric 120 ug/mL	+0.2	-0.7	-0.1	+0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	-0.3	+0.2	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.6	+0.3	+0.5	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	+0.3	+0.8	-0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.3	-0.6	+0.4	-0.0
carbon source	L-Valine (C)	+0.2	-0.3	+1.3	-0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	+1.0	+0.1	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.0	-0.3	+0.3	+0.9	-0.0
solid stress	Fraxetin 2 mM; solid stress	+0.2	-0.1	+0.9	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.2	+1.6	-0.3	+0.5