Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF552 and GFF553 are separated by 26 nucleotidesGFF553 and GFF554 are separated by 25 nucleotidesGFF554 and GFF555 are separated by 17 nucleotidesGFF555 and GFF556 are separated by 81 nucleotides GFF552 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 594,034 to 594,627 GFF552 GFF553 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 594,654 to 595,166 GFF553 GFF554 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 595,192 to 595,968 GFF554 GFF555 - Putative inner membrane protein, at 595,986 to 596,789 GFF555 GFF556 - no description, at 596,871 to 597,467 GFF556
Group Condition GFF552 GFF553 GFF554 GFF555 GFF556
complex community Community=Kojac gum; Passage=4 +0.1 -0.6 N.D. -0.5 -0.4
complex community Community=Locust bean gum; Passage=4 +0.1 -0.7 N.D. -0.5 -0.1
complex community Community=Locust bean gum; Passage=4 -0.4 -0.1 N.D. -0.2 -0.5
complex community Community=arabino-guar; Passage=4 -0.3 -0.5 N.D. -0.1 -0.1
phage phage_bap4 -0.2 -0.2 N.D. -0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 -0.2 N.D. -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.0 -0.1 N.D. -0.2 -0.2
phage phage_bap4 -0.2 -0.1 N.D. +0.0 -0.3
complex community Community=Locust bean gum; Passage=4 -0.2 -0.1 N.D. -0.2 +0.1
complex community Community=guar; Passage=4 +0.1 -0.5 N.D. +0.3 -0.4
phage phage_bap4 +0.1 -0.2 N.D. -0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.1 N.D. -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.1 N.D. -0.2 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 -0.3 N.D. -0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.0 N.D. +0.1 -0.3
phage phage_bap4 -0.0 -0.2 N.D. -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 +0.1 N.D. -0.1 -0.2
complex community Community=guar; Passage=4 +0.2 -0.1 N.D. +0.1 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 +0.0 N.D. +0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.2 N.D. -0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.2 N.D. +0.1 -0.1
no phage control no phage control +0.1 -0.1 N.D. -0.1 +0.2
complex community Community=arabino-guar; Passage=4 +0.1 -0.2 N.D. +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.0 +0.3 N.D. -0.0 -0.1
complex community Community=guar; Passage=4 +0.3 +0.2 N.D. -0.3 -0.0
complex community Community=arabino-guar; Passage=4 +0.3 -0.5 N.D. -0.0 +0.4
phage phage_bap4 -0.0 -0.1 N.D. +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.2 N.D. -0.1 +0.0
complex community Community=guar; Passage=4 -0.1 -0.2 N.D. +0.3 +0.3
phage phage_bap4 +0.2 +0.0 N.D. +0.1 +0.1
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