Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28335	PS417_28340	PS417_28345	PS417_28350	PS417_28355
soil	soil sample 3; outgrowth in LB	+0.2	+0.1	-1.1	-1.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.5	+0.0	-1.0	-0.8
soil	soil sample 6; outgrowth in LB	-0.1	-1.1	+0.1	-0.9	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.6	-0.1	-1.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.7	+0.3	-0.4	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	-0.4	+0.1	-1.1	-0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.0	+0.2	-0.1	-1.3	-0.4
stress	Gentamicin 0.008 mg/ml	-0.3	-0.3	-0.5	-0.7	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.4	-0.4	-1.0	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	-0.4	+0.3	-1.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.3	+0.1	-1.1	-0.5
supernatant control	Vogels_fungal_media 0.1X	-0.1	-0.5	+0.1	-0.8	+0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.4	+0.2	-1.0	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.2	+0.6	-1.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.6	-0.1	-0.4	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	-0.3	-0.9	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	+0.6	+0.2	-1.2	-0.5
soil	soil sample 4; outgrowth in LB	+0.2	-0.6	-0.1	-0.9	+0.8
carbon source	L-Valine (C)	+0.0	-1.2	-0.2	+1.3	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	+0.2	-0.2	+0.3	-1.0	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.5	-0.5	+0.1	+0.5
soil	soil sample 7; outgrowth in LB	-0.3	+0.9	+0.1	-0.7	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.8	-0.1	-1.1	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	+0.1	+0.7	-0.9	+0.5
solid stress	Fraxetin 2 mM; solid stress	+0.2	+0.8	+0.2	-0.5	-0.5
stress	methylglyoxal 0.032 vol%	-0.0	-0.5	+0.6	+0.8	-0.2
phage	Wcs_0.1	+0.1	+1.0	+0.1	+0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+1.0	+0.8	-0.0	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+1.2	+0.1	-1.0	+0.5
carbon source	L-Valine (C)	+0.3	+0.8	-0.4	+1.2	-0.5