Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_28305 and PS417_28310 overlap by 4 nucleotidesPS417_28310 and PS417_28315 overlap by 1 nucleotidesPS417_28315 and PS417_28320 are separated by 11 nucleotidesPS417_28320 and PS417_28325 overlap by 4 nucleotides PS417_28305: PS417_28305 - GTP cyclohydrolase, at 6,111,652 to 6,112,548 _28305 PS417_28310: PS417_28310 - manganese ABC transporter ATP-binding protein, at 6,112,545 to 6,113,216 _28310 PS417_28315: PS417_28315 - zinc ABC transporter permease, at 6,113,216 to 6,114,082 _28315 PS417_28320: PS417_28320 - metal ABC transporter substrate-binding protein, at 6,114,094 to 6,114,972 _28320 PS417_28325: PS417_28325 - phosphoribosyl-AMP cyclohydrolase, at 6,114,969 to 6,115,382 _28325
Group Condition PS417_28305 PS417_28310 PS417_28315 PS417_28320 PS417_28325
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 N.D. -2.6 +0.2 -0.3
stress Gentamicin 0.008 mg/ml -0.4 N.D. -0.3 -0.1 -1.1
solid stress Fraxetin 2 mM; solid stress -0.2 N.D. -0.0 +0.1 -1.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.2 N.D. -0.2 -0.2 -1.3
phage P. simiae OR Antrim MOI 0.1 +0.2 N.D. -0.3 -0.2 -1.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 N.D. +0.3 -0.2 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 N.D. -0.5 +0.2 -0.7
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.2 N.D. -0.9 +0.4 -0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.2 N.D. +0.6 -1.0 -0.7
phage JP1 MOI 0.1 +0.2 N.D. -1.7 +0.1 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.8 -0.5 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 N.D. -0.2 +0.4 -1.2
phage Wcs_1 +0.4 N.D. -0.7 -0.2 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -1.0 +0.6 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 N.D. +0.5 -0.5 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. -1.0 -0.0 +1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.6 +0.2 +1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 N.D. +0.8 +0.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -0.6 -0.0 +1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 N.D. -0.6 -0.1 +1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. +0.9 +0.6 -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB -0.4 N.D. +0.9 +0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 N.D. -0.2 +1.0 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. +0.9 -0.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 N.D. +0.4 +0.1 +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 N.D. +0.4 -0.1 +1.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 N.D. +0.7 -0.3 +1.4
liquid stress Fraxetin 2 mM; liquid stress +0.1 N.D. +0.5 +0.5 +1.0
root root sample 6; outgrowth in LB -0.0 N.D. +0.8 +0.1 +1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.4 N.D. +1.1 +0.4 +1.3
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PS417_28305
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PS417_28310
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PS417_28320
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