Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02805	PS417_02810	PS417_02815	PS417_02820	PS417_02825
nitrogen source	Urea (N)	-3.9	N.D.	-0.8	+0.1	-0.6
nitrogen source	Inosine (N)	-2.2	N.D.	-1.1	-1.0	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.5	N.D.	-0.5	-0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.6	N.D.	-0.5	-0.7	+0.4
phage	JP1 MOI 1	-1.6	N.D.	-1.1	-0.3	-0.3
phage	JP1 MOI 10	-2.4	N.D.	-0.8	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	N.D.	-0.4	-0.2	-0.2
phage	P. simiae OR Antrim MOI 10	-2.7	N.D.	-0.2	+0.2	-0.4
phage	JP1 MOI 0.1	-1.2	N.D.	-1.2	-0.6	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-3.0	N.D.	-0.2	+0.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.0	N.D.	-0.1	-0.7	+0.0
root	root sample 6; outgrowth in LB	-1.8	N.D.	+0.7	-1.3	-0.5
soil	soil sample 7; outgrowth in LB	-2.8	N.D.	+0.5	-0.2	-0.3
liquid stress	Fraxetin 1 mM; liquid stress	-2.5	N.D.	-0.2	-0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	N.D.	-0.6	-0.5	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-2.3	N.D.	+0.4	-0.3	+0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-2.0	N.D.	+0.3	-0.5	+0.2
phage	P. simiae OR Antrim MOI 0.1	-1.9	N.D.	-0.7	+1.2	-0.3
phage	P. simiae OR Antrim MOI 1	-3.0	N.D.	-0.1	+1.2	+0.1
phage	JP1 MOI 1	+0.7	N.D.	-1.4	-0.9	-0.1
phage	P. simiae ORA MOI 0.1	-1.3	N.D.	-0.6	+0.7	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	N.D.	-0.6	+1.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	N.D.	-0.5	+1.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-1.7	+0.6	+0.6
seeds	Growth on radish seeds for 72 hours	-0.9	N.D.	-0.7	+0.7	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	N.D.	-0.3	+1.8	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	N.D.	+0.5	+0.8	+0.7
carbon source	D-Glucose (C)	+0.4	N.D.	-0.7	+1.8	-0.0
stress	Gentamicin 0.008 mg/ml	+1.1	N.D.	+0.3	+0.9	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.2	N.D.	-0.3	+0.3	+0.1