Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28255	PS417_28260	PS417_28265	PS417_28270	PS417_28275
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	-3.2	-0.8	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.0	-3.6	+0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.3	-2.3	-0.6	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.0	-2.6	-0.1	-0.4
stress	methylglyoxal 0.032 vol%	-0.6	+0.3	+1.8	-0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.5	+1.9	-0.9	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.2	+1.6	+0.4	-1.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.1	+1.7	-0.7	+0.9
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.1	+3.0	-0.2	-0.0
soil	soil sample 5; outgrowth in LB	+0.4	-0.2	+3.3	-0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.0	+3.2	-0.3	-0.8
stress	Gentamicin 0.008 mg/ml	-0.5	+0.1	+2.1	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.1	+2.9	-0.5	-0.0
soil	soil sample 7; outgrowth in LB	-0.3	-0.2	+3.3	-0.1	-0.2
soil	soil sample 8; outgrowth in LB	-0.1	-0.0	+3.2	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	+2.8	+0.7	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.1	+3.3	+0.6	-0.5
soil	soil sample 6; outgrowth in LB	-0.1	-0.1	+4.6	-0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.0	+3.0	+0.3	+0.0
soil	soil sample 4; outgrowth in LB	-0.1	-0.1	+4.2	-0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.1	+4.8	-0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.3	+5.8	-0.0	-1.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-0.3	+5.5	-0.9	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.1	+3.9	+0.0	+0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	+0.1	+4.8	+0.8	-0.5
soil	soil sample 2; outgrowth in LB	+0.1	+0.3	+4.7	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.2	+1.5	+1.8	+2.0
root	root sample 6; outgrowth in LB	+0.1	+0.5	+6.1	-0.4	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.0	+5.1	+1.4	-0.0
soil	soil sample 3; outgrowth in LB	-0.2	+0.2	+8.4	+0.1	-0.1