Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28245	PS417_28250	PS417_28255	PS417_28260	PS417_28265
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.3	+0.0	-3.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+0.1	+0.1	-3.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.5	+0.0	-2.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	+0.5	+0.3	-2.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.5	+0.4	+0.1	-1.5
stress	Gentamicin 0.008 mg/ml	N.D.	-0.6	-0.5	+0.1	+2.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.9	+0.5	+0.0	+1.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	-0.2	-0.5	+1.9
stress	Thallium(I) acetate 0.0625 mg/ml	N.D.	-0.3	-0.2	-0.1	+2.6
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.1	-0.5	-0.1	+3.0
soil	soil sample 7; outgrowth in LB	N.D.	-0.1	-0.3	-0.2	+3.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	-0.3	-0.1	+2.8
soil	soil sample 8; outgrowth in LB	N.D.	+0.1	-0.1	-0.0	+3.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	-0.1	+0.1	+2.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	+0.2	-0.1	+3.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	+0.3	-0.1	+2.9
soil	soil sample 5; outgrowth in LB	N.D.	+0.3	+0.4	-0.2	+3.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.3	-0.0	+3.2
soil	soil sample 4; outgrowth in LB	N.D.	-0.1	-0.1	-0.1	+4.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	+0.3	+0.0	+3.0
soil	soil sample 6; outgrowth in LB	N.D.	+0.1	-0.1	-0.1	+4.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	+0.3	+0.1	+3.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.2	+0.0	-0.1	+4.8
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.2	-0.2	+0.1	+4.8
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.1	-0.1	-0.3	+5.5
soil	soil sample 2; outgrowth in LB	N.D.	-0.0	+0.1	+0.3	+4.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.3	-0.2	+0.0	+5.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.4	-0.3	+0.3	+5.8
root	root sample 6; outgrowth in LB	N.D.	+0.3	+0.1	+0.5	+6.1
soil	soil sample 3; outgrowth in LB	N.D.	-0.1	-0.2	+0.2	+8.4