Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02800	PS417_02805	PS417_02810	PS417_02815	PS417_02820
nitrogen source	Urea (N)	-0.5	-3.9	N.D.	-0.8	+0.1
nitrogen source	Inosine (N)	-0.5	-2.2	N.D.	-1.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-2.6	N.D.	-0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-2.5	N.D.	-0.5	-0.8
soil	soil sample 7; outgrowth in LB	-0.8	-2.8	N.D.	+0.5	-0.2
phage	JP1 MOI 10	-0.3	-2.4	N.D.	-0.8	+0.2
phage	JP1 MOI 1	-0.1	-1.6	N.D.	-1.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-2.0	N.D.	-0.1	-0.7
phage	JP1 MOI 0.1	-0.1	-1.2	N.D.	-1.2	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9	-1.2	N.D.	-0.6	-0.4
root	root sample 6; outgrowth in LB	-0.7	-1.8	N.D.	+0.7	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	-0.8	N.D.	+0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-3.0	N.D.	-0.2	+0.0
stress	methylglyoxal 0.032 vol%	-1.2	-1.0	N.D.	+0.3	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-2.2	N.D.	-0.4	-0.2
phage	P. simiae ORA MOI 0.1	-0.9	-1.3	N.D.	-0.6	+0.7
phage	P. simiae OR Antrim MOI 10	+0.5	-2.7	N.D.	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-1.8	N.D.	-0.6	-0.5
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.3	-2.3	N.D.	+0.4	-0.3
phage	P. simiae OR Antrim MOI 0.1	+0.3	-1.9	N.D.	-0.7	+1.2
phage	JP1 MOI 1	+0.6	+0.7	N.D.	-1.4	-0.9
phage	P. simiae OR Antrim MOI 1	+0.9	-3.0	N.D.	-0.1	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-1.0	N.D.	+0.5	+0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.3	+1.3	N.D.	-0.5	+0.5
seeds	Growth on radish seeds for 72 hours	-1.2	+0.8	N.D.	-0.4	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-1.4	N.D.	-0.5	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.9	N.D.	-0.6	+1.0
seeds	Growth on radish seeds for 72 hours	-1.2	+2.0	N.D.	-0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	+2.2	N.D.	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+3.1	+0.7	N.D.	+0.1	+0.9