Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28230	PS417_28235	PS417_28245	PS417_28250	PS417_28255
soil	soil sample 7; outgrowth in LB	-3.7	+0.1	N.D.	-0.1	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.0	-0.2	N.D.	-0.6	-0.1
solid stress	Fraxetin 3 mM; solid stress	-2.0	+0.1	N.D.	-0.7	-0.0
soil	soil sample 2; outgrowth in LB	-2.5	+0.0	N.D.	-0.0	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-2.6	+0.5	N.D.	-0.1	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.5	-0.5	N.D.	-0.9	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.5	+0.3	N.D.	+0.3	-0.2
phage	Wcs_1	-2.3	+0.1	N.D.	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.2	+0.2	N.D.	+0.8	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.3	-0.1	N.D.	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.6	-0.0	N.D.	+0.6	+0.5
seeds	Growth on radish seeds for 72 hours	-1.6	-0.2	N.D.	-0.1	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.3	+0.4	N.D.	+0.5	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	+0.5	N.D.	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.4	+0.3	N.D.	-0.2	+0.4
soil	soil sample 5; outgrowth in LB	-1.9	+0.4	N.D.	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	+0.1	N.D.	+0.4	+0.5
carbon source	L-Valine (C)	+0.9	-0.3	N.D.	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.2	N.D.	+1.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.5	N.D.	+0.9	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.5	N.D.	+0.8	+0.4
carbon source	L-Valine (C)	+0.6	+0.6	N.D.	-0.9	+0.3
stress	Phosphomycin 0.001 mg/ml	+1.8	+0.1	N.D.	-0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.4	N.D.	+1.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.2	N.D.	+1.1	+0.5
stress	Phosphomycin 0.003 mg/ml	+2.3	+0.1	N.D.	-0.9	-0.1
stress	Phosphomycin 0.002 mg/ml	+2.2	+0.1	N.D.	-0.7	+0.3
carbon source	NAG (C)	+2.1	-0.0	N.D.	+0.1	+0.0
root	root sample 6; outgrowth in LB	+1.5	+0.6	N.D.	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.1	+0.2	N.D.	+0.7	+0.4