Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28225	PS417_28230	PS417_28235	PS417_28245	PS417_28250
soil	soil sample 7; outgrowth in LB	-0.8	-3.7	+0.1	N.D.	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-3.0	-0.2	N.D.	-0.6
solid stress	Fraxetin 3 mM; solid stress	-1.8	-0.5	-0.5	N.D.	-0.9
solid stress	Fraxetin 3 mM; solid stress	-0.6	-2.0	+0.1	N.D.	-0.7
soil	soil sample 2; outgrowth in LB	-0.3	-2.5	+0.0	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-1.9	+0.0	N.D.	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-1.1	-1.1	+0.2	N.D.	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-1.7	+0.5	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-1.7	+0.1	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-3.2	+0.2	N.D.	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-2.3	+0.4	N.D.	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.7	+0.2	N.D.	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.6	-2.6	+0.5	N.D.	-0.1
phage	Wcs_1	+0.2	-2.3	+0.1	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-2.6	-0.0	N.D.	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.8	-2.5	+0.3	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-2.1	-0.2	N.D.	+1.5
soil	soil sample 5; outgrowth in LB	+0.4	-1.9	+0.4	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.2	+0.5	N.D.	+0.8
carbon source	2'-Deoxyinosine 5 mM (C)	-1.6	+0.3	+0.4	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	-1.4	+0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.6	+0.4	N.D.	+1.0
stress	Phosphomycin 0.001 mg/ml	-0.5	+1.8	+0.1	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	+2.1	+0.2	N.D.	+0.7
carbon source	L-Valine (C)	+1.3	+0.9	-0.3	N.D.	-0.8
stress	Phosphomycin 0.002 mg/ml	-0.3	+2.2	+0.1	N.D.	-0.7
stress	Phosphomycin 0.003 mg/ml	+0.2	+2.3	+0.1	N.D.	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.5	+0.2	N.D.	+1.1
carbon source	NAG (C)	+0.5	+2.1	-0.0	N.D.	+0.1
root	root sample 6; outgrowth in LB	+0.6	+1.5	+0.6	N.D.	+0.3