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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5510 and GFF5511 are separated by 135 nucleotides
GFF5511 and GFF5512 are separated by 36 nucleotides
GFF5512 and GFF5513 overlap by 4 nucleotides
GFF5513 and GFF5514 overlap by 4 nucleotides
GFF5510 - protein of unknown function DUF306, Meta and HslJ, at 141,258 to 141,713
GFF5510
GFF5511 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 141,849 to 142,769
GFF5511
GFF5512 - N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18), at 142,806 to 143,360
GFF5512
GFF5513 - N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18), at 143,357 to 144,547
GFF5513
GFF5514 - Threonylcarbamoyl-AMP synthase (EC 2.7.7.87) / SUA5 domain with internal deletion, at 144,544 to 145,545
GFF5514
Group
Condition
GFF5510
GFF5511
GFF5512
GFF5513
GFF5514
complex community
Community=guar; Passage=4
-0.0
-0.3
-6.7
-6.0
N.D.
complex community
Community=arabino-guar; Passage=4
+0.4
-0.4
-6.8
-6.0
N.D.
complex community
Community=guar; Passage=4
+0.3
-0.1
-6.7
-6.0
N.D.
complex community
Community=arabino-guar; Passage=4
-0.0
-0.3
-6.4
-5.7
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.1
-6.4
-5.7
N.D.
complex community
Community=arabino-guar; Passage=4
+0.3
-0.3
-6.5
-5.8
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
+0.1
-6.5
-5.8
N.D.
complex community
Community=guar; Passage=4
-0.1
+0.1
-6.4
-5.7
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.2
-6.1
-5.7
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.1
-6.3
-5.6
N.D.
complex community
Community=guar; Passage=4
+0.2
-0.0
-6.4
-5.7
N.D.
complex community
Community=Kojac gum; Passage=4
-0.1
+0.2
-6.3
-5.6
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.4
-6.2
-5.4
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.2
-3.2
-3.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.1
-3.0
-3.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.1
-3.4
-2.9
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
+0.1
-3.3
-2.8
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.1
-3.2
-2.7
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.1
-3.1
-2.9
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.1
-3.2
-2.7
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.1
-3.4
-2.6
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.2
-3.4
-2.5
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.0
-2.9
-2.8
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
+0.1
-3.5
-2.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.1
-2.7
-3.2
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
-2.8
-2.9
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.0
-3.0
-2.6
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.1
-2.5
-3.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.2
-2.9
-2.6
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.1
-2.0
-3.2
N.D.
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