Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_28195 and PS417_28200 are separated by 3 nucleotidesPS417_28200 and PS417_28205 overlap by 2 nucleotidesPS417_28205 and PS417_28210 are separated by 75 nucleotidesPS417_28210 and PS417_28215 are separated by 11 nucleotides PS417_28195: PS417_28195 - amino acid ABC transporter permease, at 6,087,488 to 6,088,318 _28195 PS417_28200: PS417_28200 - hypothetical protein, at 6,088,322 to 6,088,567 _28200 PS417_28205: PS417_28205 - transporter, at 6,088,566 to 6,089,858 _28205 PS417_28210: PS417_28210 - pyruvate carboxylase subunit B, at 6,089,934 to 6,091,742 _28210 PS417_28215: PS417_28215 - pyruvate carboxylase subunit A, at 6,091,754 to 6,093,169 _28215
Group Condition PS417_28195 PS417_28200 PS417_28205 PS417_28210 PS417_28215
seeds Growth on radish seeds for 72 hours -0.4 -1.5 +0.1 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 -1.1 -0.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.5 -0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.1 -0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.8 -0.2 N.D. N.D.
nitrogen source nitrate (N) -0.4 -0.7 +0.2 N.D. N.D.
phage Wcs_1 +0.2 -1.0 +0.1 N.D. N.D.
soil soil sample 3; outgrowth in LB +0.4 -0.4 -0.7 N.D. N.D.
phage Wcs_0.1 +0.0 -0.9 +0.2 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 -0.3 -0.6 +0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.9 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.8 -0.0 N.D. N.D.
soil soil sample 7; outgrowth in LB -0.6 -0.2 +0.4 N.D. N.D.
phage P. simiae OR1 MOI 0.1 +0.0 -1.0 +0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.8 +0.6 N.D. N.D.
phage JP1 MOI 1 -0.2 +0.4 -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 -1.0 +0.3 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.1 -0.8 +0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.6 +0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.7 +0.4 N.D. N.D.
soil soil sample 6; outgrowth in LB -0.2 +0.6 -0.2 N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.0 +0.6 -0.5 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +0.4 -0.6 +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.8 +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.1 +0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +0.6 +0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.7 +0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 +1.1 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 +0.3 +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +1.3 +0.3 N.D. N.D.
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PS417_28195
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PS417_28200
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PS417_28210
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PS417_28215
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