Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28145	PS417_28150	PS417_28155	PS417_28160	PS417_28165
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.4	-0.0	-0.3	-0.0	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.6	+0.0	-0.0	-0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	+0.2	+0.1	-0.1	-0.2
carbon source	L-Valine (C)	-1.9	+0.1	-0.2	-0.0	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.6	-0.3	-0.1	-0.1	+0.0
phage	JP1 MOI 1	-1.1	-0.2	-0.0	+0.1	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	-0.1	-0.2	+0.0	+0.0
solid stress	Fraxetin 1 mM; solid stress	-1.4	-0.2	+0.0	+0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.6	+0.0	+0.1	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.4	-0.2	+0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.7	-0.2	-0.1	+0.1
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3	+0.0	-0.2	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	-0.4	+0.3	-0.1	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.9	+0.4	-0.1	+0.0	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.2	+0.3	-0.1	+0.0
root	root sample 6; outgrowth in LB	-0.7	-0.6	+0.8	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	-0.0	+0.2	-0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.1	+0.2	+0.3	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.2	+0.4	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.4	+0.0	+0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	+0.5	+0.1	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.2	-0.1	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	-0.4	+0.3	+0.1	+0.2
phage	P. simiae ORA MOI 1	+0.9	-0.3	-0.1	+0.1	+0.3
phage	JP1 MOI 10	+1.3	+0.3	-0.1	-0.1	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.4	+0.1	-0.1	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.3	+0.2	+0.2	-0.1
phage	P. simiae ORA MOI 0.1	+0.8	+0.1	+0.5	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.2	+0.0	+0.2	+0.4
carbon source	L-Valine (C)	+1.4	+0.3	-0.1	+0.0	+0.2