Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_28115 and PS417_28120 are separated by 11 nucleotidesPS417_28120 and PS417_28125 are separated by 333 nucleotidesPS417_28125 and PS417_28130 are separated by 182 nucleotidesPS417_28130 and PS417_28135 are separated by 392 nucleotides PS417_28115: PS417_28115 - phosphoribosylaminoimidazole carboxylase, at 6,066,820 to 6,067,905 _28115 PS417_28120: PS417_28120 - N5-carboxyaminoimidazole ribonucleotide mutase, at 6,067,917 to 6,068,408 _28120 PS417_28125: PS417_28125 - LysR family transcriptional regulator, at 6,068,742 to 6,069,650 _28125 PS417_28130: PS417_28130 - aspartate ammonia-lyase, at 6,069,833 to 6,071,257 _28130 PS417_28135: PS417_28135 - sodium:alanine symporter, at 6,071,650 to 6,073,095 _28135
Group Condition PS417_28115 PS417_28120 PS417_28125 PS417_28130 PS417_28135
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -0.6
phage P. simiae OR Antrim MOI 10 N.D. N.D. N.D. N.D. -0.5
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -0.5
phage P. simiae OR Antrim MOI 0.1 N.D. N.D. N.D. N.D. -0.5
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.4
stress Choline chloride 300 mM N.D. N.D. N.D. N.D. -0.4
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.4
phage P. simiae OR Antrim MOI 10 N.D. N.D. N.D. N.D. -0.4
solid stress Scopoletin 2 mM; solid stress N.D. N.D. N.D. N.D. +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.5
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. +0.6
carbon source L-Alanine (C) N.D. N.D. N.D. N.D. +0.7
carbon source L-Alanine (C) N.D. N.D. N.D. N.D. +0.7
carbon source L-Asparagine (C) N.D. N.D. N.D. N.D. +0.8
carbon source L-Asparagine (C) N.D. N.D. N.D. N.D. +0.8
carbon source L-Glutamine (C) N.D. N.D. N.D. N.D. +0.9
carbon source L-Glutamine (C) N.D. N.D. N.D. N.D. +1.1
carbon source L-Valine (C) N.D. N.D. N.D. N.D. +1.8
carbon source L-Valine (C) N.D. N.D. N.D. N.D. +1.9
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