Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_28110 and PS417_28115 are separated by 104 nucleotidesPS417_28115 and PS417_28120 are separated by 11 nucleotidesPS417_28120 and PS417_28125 are separated by 333 nucleotidesPS417_28125 and PS417_28130 are separated by 182 nucleotides PS417_28110: PS417_28110 - transglycosylase, at 6,066,470 to 6,066,715 _28110 PS417_28115: PS417_28115 - phosphoribosylaminoimidazole carboxylase, at 6,066,820 to 6,067,905 _28115 PS417_28120: PS417_28120 - N5-carboxyaminoimidazole ribonucleotide mutase, at 6,067,917 to 6,068,408 _28120 PS417_28125: PS417_28125 - LysR family transcriptional regulator, at 6,068,742 to 6,069,650 _28125 PS417_28130: PS417_28130 - aspartate ammonia-lyase, at 6,069,833 to 6,071,257 _28130
Group Condition PS417_28110 PS417_28115 PS417_28120 PS417_28125 PS417_28130
phage JP1 MOI 1 -1.0 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours -1.0 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 24 hours -0.8 N.D. N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.8 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 -0.8 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.6 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. N.D. N.D. N.D.
phage FRSphage -0.6 N.D. N.D. N.D. N.D.
phage JP1 MOI 0.1 -0.6 N.D. N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% -0.6 N.D. N.D. N.D. N.D.
carbon source Fumarate (C) -0.6 N.D. N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -0.6 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.6 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. N.D. N.D. N.D.
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. N.D. N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 N.D. N.D. N.D. N.D.
phage P. simiae Grant Run MOI 0.1 +0.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 N.D. N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.8 N.D. N.D. N.D. N.D.
soil soil sample 6; outgrowth in LB +0.8 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.8 N.D. N.D. N.D. N.D.
soil soil sample 2; outgrowth in LB +0.9 N.D. N.D. N.D. N.D.
soil soil sample 4; outgrowth in LB +1.1 N.D. N.D. N.D. N.D.
root root sample 6; outgrowth in LB +1.4 N.D. N.D. N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +1.7 N.D. N.D. N.D. N.D.
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