Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF5479 and GFF5480 are separated by 56 nucleotidesGFF5480 and GFF5481 are separated by 2 nucleotidesGFF5481 and GFF5482 are separated by 18 nucleotidesGFF5482 and GFF5483 are separated by 148 nucleotides GFF5479 - Isochorismate pyruvate-lyase (EC 4.-.-.-), at 2,480,923 to 2,481,255 GFF5479 GFF5480 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 2,481,312 to 2,481,800 GFF5480 GFF5481 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 2,481,803 to 2,483,071 GFF5481 GFF5482 - Ferredoxin reductase, at 2,483,090 to 2,484,076 GFF5482 GFF5483 - LysR-family transcriptional regulator, at 2,484,225 to 2,485,145 GFF5483
Group Condition GFF5479 GFF5480 GFF5481 GFF5482 GFF5483
carbon source Ying_Nucleobase14 rep B; time point 1 N.D. +0.0 +0.1 -0.8 +0.0
carbon source Ying_Others16 rep B; time point 1 N.D. -0.0 -0.0 -0.6 +0.0
carbon source Ying_OrganicAcid7 rep B; time point 3 N.D. +0.0 -0.0 -0.4 -0.1
carbon source Ying_all64 rep C; time point 3 N.D. -0.5 +0.0 -0.1 +0.1
carbon source Ying_sugar7 rep A; time point 2 N.D. +0.0 +0.1 -0.5 +0.1
carbon source Ying_all64 rep C; time point 2 N.D. -0.4 +0.2 -0.1 +0.1
carbon source Ying_OrganicAcid7 rep C; time point 3 N.D. -0.2 -0.1 -0.2 +0.3
carbon source Ying_AminoAcid20 rep B; time point 2 N.D. +0.1 +0.2 -0.4 -0.1
carbon source Ying_sugar7 rep B; time point 1 N.D. -0.0 +0.2 -0.4 +0.1
carbon source Ying_Others16 rep A; time point 2 N.D. +0.0 +0.2 -0.2 -0.1
carbon source Ying_AminoAcid20 rep C; time point 2 N.D. -0.1 +0.1 -0.2 +0.1
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. +0.2 +0.1 -0.6 +0.3
carbon source Ying_sugar7 rep B; time point 2 N.D. +0.1 +0.1 -0.1 -0.2
carbon source Ying_all64 rep B; time point 1 N.D. +0.0 -0.1 -0.2 +0.2
carbon source Ying_Nucleobase14 rep C; time point 1 N.D. +0.1 -0.0 -0.3 +0.1
carbon source Ying_OrganicAcid7 rep B; time point 2 N.D. +0.1 +0.1 -0.4 +0.0
carbon source Ying_Others16 rep C; time point 2 N.D. +0.2 +0.1 -0.4 +0.0
carbon source Ying_Others16 rep A; time point 1 N.D. +0.2 +0.1 -0.3 -0.0
carbon source Ying_Others16 rep C; time point 3 N.D. +0.1 -0.1 -0.2 +0.3
carbon source Ying_AminoAcid20 rep A; time point 1 N.D. -0.0 +0.2 -0.3 +0.2
carbon source Ying_AminoAcid20 rep B; time point 3 N.D. +0.2 -0.0 -0.2 +0.1
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. +0.1 +0.2 -0.3 +0.2
carbon source Ying_all64 rep A; time point 1 N.D. +0.0 +0.4 -0.2 +0.0
carbon source Ying_all64 rep C; time point 1 N.D. +0.2 +0.2 -0.4 +0.2
carbon source Ying_OrganicAcid7 rep A; time point 3 N.D. -0.0 +0.2 -0.1 +0.2
carbon source Ying_sugar7 rep A; time point 1 N.D. +0.0 +0.2 +0.2 -0.1
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. -0.1 -0.0 +0.3 +0.1
carbon source Ying_sugar7 rep B; time point 3 N.D. -0.0 -0.1 +0.3 +0.2
carbon source Ying_sugar7 rep C; time point 1 N.D. +0.1 +0.2 +0.4 -0.2
carbon source Ying_OrganicAcid7 rep C; time point 2 N.D. +0.1 +0.3 +0.3 +0.0
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