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Fitness for 5 genes in
Pseudomonas simiae WCS417
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PS417_28030 and PS417_28035 are separated by 155 nucleotides
PS417_28035 and PS417_28040 are separated by 45 nucleotides
PS417_28040 and PS417_28050 are separated by 270 nucleotides
PS417_28050 and PS417_28055 are separated by 3 nucleotides
PS417_28030: PS417_28030 - hypothetical protein, at 6,049,455 to 6,049,832
_28030
PS417_28035: PS417_28035 - transcriptional regulator PhoB, at 6,049,988 to 6,050,677
_28035
PS417_28040: PS417_28040 - histidine kinase, at 6,050,723 to 6,052,045
_28040
PS417_28050: PS417_28050 - hypothetical protein, at 6,052,316 to 6,053,656
_28050
PS417_28055: PS417_28055 - peptidase, at 6,053,660 to 6,054,322
_28055
Group
Condition
PS417
_28030
PS417
_28035
PS417
_28040
PS417
_28050
PS417
_28055
seeds
Growth on radish seeds for 72 hours
-0.8
-2.9
-3.2
-2.5
-0.4
seeds
Growth on radish seeds for 72 hours
-1.8
-3.3
-2.4
-0.6
-0.1
seeds
Growth on radish seeds for 72 hours
-1.1
-2.0
-2.9
-0.1
-0.0
solid stress
Scopoletin 1 mM; solid stress
+0.5
-0.1
-0.4
-5.7
-0.2
supernatant
LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
+0.0
-2.1
-1.9
-1.0
-0.4
solid stress
Scopoletin 1 mM; solid stress
+0.1
-0.1
-0.5
-4.7
+0.1
solid stress
80% Methanol 0.5 mM; solid stress
-0.1
-0.2
-0.1
-4.6
-0.1
solid stress
Fraxetin 0.5 mM; solid stress
-0.1
-0.3
-0.4
-4.2
-0.0
seeds
Growth on radish seeds for 24 hours
+0.1
-1.6
-2.2
-1.0
-0.1
liquid stress
Scopoletin 3 mM; liquid stress
+0.3
-0.5
+0.7
-5.0
+0.0
solid stress
Fraxetin 0.5 mM; solid stress
-0.0
-0.2
-0.7
-3.6
+0.1
solid stress
Fraxetin 0.5 mM; solid stress
+0.4
-0.2
+0.0
-4.7
+0.1
solid stress
Scopoletin 1 mM; solid stress
+0.4
-0.2
-0.2
-4.1
+0.0
solid stress
80% Methanol 1 mM; solid stress
+0.2
-0.5
-0.2
-3.9
+0.2
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.0
+0.4
+0.3
-4.6
-0.1
solid stress
Fraxetin 1 mM; solid stress
-0.1
-0.3
+0.5
-3.9
-0.1
liquid stress
Fraxetin 2 mM; liquid stress
-0.3
+0.2
+0.4
-4.3
+0.1
solid stress
Scopoletin 1 mM; solid stress
+0.4
-0.4
-0.2
-3.6
-0.1
solid stress
Scopoletin 2 mM; solid stress
+0.4
-0.2
-0.1
-3.9
+0.2
liquid stress
Fraxetin 3 mM; liquid stress
+0.3
+0.2
+0.5
-4.5
-0.0
solid stress
Fraxetin 2 mM; solid stress
+0.2
+0.5
+0.4
-4.1
-0.0
solid stress
Fraxetin 2 mM; solid stress
+0.3
+0.5
+0.4
-4.1
+0.2
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.7
+0.2
+0.4
-3.5
-0.2
solid stress
Fraxetin 3 mM; solid stress
+0.3
+0.7
+0.6
-3.9
+0.2
solid stress
Fraxetin 3 mM; solid stress
+0.2
+0.8
+1.1
-3.1
-0.1
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
+0.7
+0.6
+0.5
-2.8
+0.3
solid stress
Fraxetin 3 mM; solid stress
+0.6
+0.8
+1.1
-3.2
+0.0
solid stress
Fraxetin 3 mM; solid stress
+0.1
+1.0
+0.9
-2.7
+0.0
carbon source
L-Valine (C)
-0.8
-1.0
-0.4
+3.2
-0.3
stress
Cobalt chloride 0.16 mM
-0.3
-0.3
-0.5
+3.7
-0.1
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