Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF5474 and GFF5475 are separated by 42 nucleotidesGFF5475 and GFF5476 overlap by 4 nucleotidesGFF5476 and GFF5477 are separated by 15 nucleotidesGFF5477 and GFF5478 are separated by 15 nucleotides GFF5474 - Epoxyqueuosine (oQ) reductase QueG, at 2,476,473 to 2,477,564 GFF5474 GFF5475 - TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 2,477,607 to 2,478,143 GFF5475 GFF5476 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 2,478,140 to 2,479,597 GFF5476 GFF5477 - Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-), at 2,479,613 to 2,479,942 GFF5477 GFF5478 - Tricarboxylate transport protein TctC, at 2,479,958 to 2,480,926 GFF5478
Group Condition GFF5474 GFF5475 GFF5476 GFF5477 GFF5478
carbon source Ying_Others16 rep A; time point 3 -0.2 N.D. -0.6 -0.2 -0.0
carbon source Ying_sugar7 rep C; time point 3 -0.1 N.D. -0.7 -0.1 +0.1
carbon source Ying_OrganicAcid7 rep A; time point 2 -0.1 N.D. -0.6 -0.0 -0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.1 N.D. -0.3 -0.4 +0.2
carbon source Ying_all64 rep C; time point 2 -0.3 N.D. +0.3 -0.2 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.3 N.D. -0.4 +0.5 -0.2
carbon source Ying_sugar7 rep A; time point 3 -0.1 N.D. +0.1 -0.4 +0.2
carbon source Ying_Nucleobase14 rep C; time point 2 +0.0 N.D. -0.3 +0.2 -0.1
carbon source Ying_all64 rep B; time point 3 -0.0 N.D. -0.4 +0.2 +0.2
carbon source Ying_Others16 rep B; time point 1 +0.2 N.D. -0.4 +0.2 +0.0
carbon source Ying_Others16 rep B; time point 2 -0.0 N.D. -0.2 +0.4 -0.0
carbon source Ying_OrganicAcid7 rep A; time point 1 +0.4 N.D. -0.4 +0.3 -0.1
carbon source Ying_all64 rep A; time point 2 +0.0 N.D. -0.5 +0.6 +0.0
carbon source Ying_AminoAcid20 rep A; time point 2 +0.1 N.D. -0.1 +0.4 -0.2
carbon source Ying_sugar7 rep B; time point 1 +0.1 N.D. -0.1 +0.3 -0.1
carbon source Ying_sugar7 rep B; time point 2 +0.1 N.D. -0.4 +0.7 -0.0
carbon source Ying_Nucleobase14 rep A; time point 1 -0.0 N.D. -0.3 +0.6 +0.1
carbon source Ying_AminoAcid20 rep C; time point 3 -0.3 N.D. +0.2 +0.2 +0.3
carbon source Ying_all64 rep A; time point 1 +0.3 N.D. -0.1 +0.4 -0.2
carbon source Ying_sugar7 rep C; time point 2 +0.1 N.D. -0.1 +0.7 -0.2
carbon source Ying_Others16 rep A; time point 2 +0.2 N.D. +0.0 +0.4 -0.1
carbon source Ying_all64 rep C; time point 3 -0.0 N.D. +1.1 -0.4 -0.1
carbon source Ying_Others16 rep B; time point 3 -0.0 N.D. +0.3 +0.5 -0.1
carbon source Ying_AminoAcid20 rep B; time point 2 +0.2 N.D. -0.1 +0.6 +0.0
carbon source Ying_AminoAcid20 rep B; time point 1 +0.0 N.D. -0.0 +0.6 +0.0
carbon source Ying_AminoAcid20 rep A; time point 1 -0.1 N.D. +0.3 +0.4 +0.1
carbon source Ying_Nucleobase14 rep B; time point 2 +0.1 N.D. -0.1 +0.7 +0.0
carbon source Ying_all64 rep B; time point 1 +0.0 N.D. +0.1 +0.6 +0.1
carbon source Ying_Nucleobase14 rep A; time point 2 +0.0 N.D. +0.2 +0.6 +0.0
carbon source Ying_Nucleobase14 rep C; time point 1 +0.2 N.D. +0.0 +0.5 +0.2
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