Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_28010	PS417_28015	PS417_28020	PS417_28025	PS417_28030
phage	P. simiae OR Antrim MOI 10	-0.6	-0.4	-1.4	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.6	-0.8	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.1	-1.7	N.D.	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.1	-0.6	+0.0	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	-1.4	N.D.	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.0	-1.6	N.D.	-0.8
phage moi 100	Time6-phageFRS	+0.2	-0.2	-1.6	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.0	-1.5	N.D.	-0.6
liquid stress	Scopoletin 3 mM; liquid stress	-0.3	-0.8	-1.1	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	+0.3	N.D.	-1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.2	-1.5	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.3	-1.1	N.D.	-0.2
no phage control	Time6-nophage	+0.2	+0.6	-0.8	N.D.	-0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.5	-1.0	N.D.	+0.4
seeds	Growth on radish seeds for 72 hours	+0.5	+0.3	+0.5	N.D.	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.5	-1.3	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.2	-0.6	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.2	+0.6	N.D.	+0.4
carbon source	Carbon source D-Mannitol 2.5 mM	+0.5	-0.4	-0.9	N.D.	+0.4
seeds	Growth on radish seeds for 72 hours	-0.5	+1.1	+0.3	N.D.	-1.1
root	root sample 6; outgrowth in LB	+0.1	-0.8	+0.8	N.D.	+0.8
phage	JP1 MOI 1	+0.1	+0.8	+1.0	N.D.	-0.8
seeds	Growth on radish seeds for 72 hours	+0.4	+1.1	+0.5	N.D.	-0.8
motility	inner cut, LB soft agar motility assay	+0.4	+0.3	+1.0	N.D.	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	+0.5	-0.8	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.3	-0.2	N.D.	+0.6
stress	Doxycycline hyclate 0.001 mg/ml	+0.9	+0.8	+0.3	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.3	+1.2	N.D.	+0.7
stress	Phosphomycin 0.001 mg/ml	+1.8	-0.8	+1.0	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	+0.6	+0.2	N.D.	+0.9