Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02775	PS417_02780	PS417_02785	PS417_02790	PS417_02795
nitrogen source	Urea (N)	-0.2	-0.1	-4.5	N.D.	-1.4
nitrogen source	Inosine (N)	-0.0	-0.2	-4.2	N.D.	-1.5
motility	inner cut, LB soft agar motility assay	-0.8	-0.8	-0.2	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-1.2	-0.3	N.D.	+0.1
phage	P. simiae OR1 MOI 0.1	-1.2	-0.0	-0.1	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	-0.7	-0.1	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.6	-0.3	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	-0.8	N.D.	-0.3
solid stress	80% Methanol 2 mM; solid stress	-0.7	-0.5	-0.3	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.3	-0.4	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.6	-0.6	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.8	-0.0	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.3	-0.4	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.4	-0.5	N.D.	+0.1
solid stress	Fraxetin 3 mM; solid stress	-0.4	-0.7	-0.2	N.D.	+0.1
carbon source	L-Valine (C)	-0.3	-0.7	-0.4	N.D.	+0.2
phage	P. simiae OR Antrim MOI 0.1	-0.8	+0.2	-0.1	N.D.	-0.4
solid stress	80% Methanol 1 mM; solid stress	-0.1	-1.1	+0.1	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-1.0	+0.1	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.4	+0.2	N.D.	+0.1
soil	soil sample 5; outgrowth in LB	+0.4	-0.1	-0.0	N.D.	-0.9
seeds	Growth on radish seeds for 72 hours	-1.0	+0.1	-0.2	N.D.	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.4	-0.0	N.D.	-0.4
soil	soil sample 2; outgrowth in LB	-0.2	+0.7	-0.4	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.4	+0.3	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.5	+0.9	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+0.3	+0.8	N.D.	-0.2
phage	JP1 MOI 10	+0.8	+0.6	+0.1	N.D.	-0.7
stress	methylglyoxal 0.032 vol%	+0.4	-0.3	+0.2	N.D.	+0.6
stress	Gentamicin 0.008 mg/ml	+1.3	+0.4	-0.1	N.D.	+0.5