Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5460 and GFF5461 are separated by 12 nucleotidesGFF5461 and GFF5462 overlap by 4 nucleotidesGFF5462 and GFF5463 overlap by 4 nucleotidesGFF5463 and GFF5464 overlap by 8 nucleotides GFF5460 - 3-oxo-tetronate 4-phosphate decarboxylase, at 91,087 to 91,752 GFF5460 GFF5461 - 2-dehydrotetronate isomerase (EC 5.3.1.35), at 91,765 to 92,583 GFF5461 GFF5462 - Cytosine deaminase (EC 3.5.4.1), at 92,580 to 93,776 GFF5462 GFF5463 - RidA/YER057c/UK114 superfamily protein, at 93,773 to 94,240 GFF5463 GFF5464 - Transcriptional regulator, AcrR family, at 94,233 to 94,919 GFF5464
Group Condition GFF5460 GFF5461 GFF5462 GFF5463 GFF5464
complex community Community=guar; Passage=4 -0.5 -0.5 -0.4 -0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.5 +0.0 -0.2 -0.2 -0.0
complex community Community=Locust bean gum; Passage=4 -0.6 -0.1 -0.4 +0.1 +0.1
complex community Community=guar; Passage=4 +0.3 -0.1 -0.5 -0.5 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.6 -0.0 +0.0 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.6 -0.1 +0.0 -0.3 +0.4
complex community Community=guar; Passage=4 -0.1 +0.1 -0.4 +0.0 -0.3
complex community Community=Locust bean gum; Passage=4 +0.5 -0.0 -0.4 -0.3 -0.3
complex community Community=Kojac gum; Passage=4 -0.2 -0.1 +0.4 -0.1 -0.4
no phage control no phage control -0.5 -0.0 +0.2 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 -0.1 -0.1 -0.2 +0.4
complex community Community=arabino-guar; Passage=4 +0.7 -0.5 +0.1 -0.4 -0.1
phage phage_bap4 -0.5 -0.0 +0.0 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.1 -0.2 +0.0 +0.4
complex community Community=arabino-guar; Passage=4 +0.3 +0.2 -0.4 +0.1 -0.3
complex community Community=arabino-guar; Passage=4 +0.5 +0.1 +0.2 -0.8 +0.0
complex community Community=Locust bean gum; Passage=4 +0.5 +0.1 -0.1 -0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.0 -0.4 +0.0 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 -0.0 -0.1 +0.1 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 -0.1 +0.3 +0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.0 -0.1 -0.1 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 -0.1 +0.2 +0.1 +0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.1 -0.1 +0.0 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.1 -0.1 +0.0 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.0 +0.1 -0.0 +0.5
phage phage_bap4 -0.0 -0.1 -0.2 +0.2 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.2 +0.0 -0.1 -0.1 +0.6
phage phage_bap4 +0.4 +0.0 -0.1 +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -0.0 +0.1 +0.2 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.1 +0.0 -0.1 +1.0
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