Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27920	PS417_27925	PS417_27930	PS417_27935	PS417_27940
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.4	-0.3	-3.8	-0.1
liquid stress	80% Methanol 3 mM; liquid stress	-0.0	+0.1	-0.2	-0.5	-2.3
seeds	Growth on radish seeds for 72 hours	+0.2	+0.7	-0.3	-2.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.8	+0.0	-0.2	-2.9
phage	P. simiae OR Antrim MOI 1	+0.1	-0.2	-0.0	-1.5	-1.0
phage	Wcs_1	-0.2	+0.2	+0.1	-1.1	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.3	+0.0	-2.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.2	-0.2	+0.2	-2.2
root	root sample 6; outgrowth in LB	-0.1	-0.5	-0.7	+1.2	-1.9
carbon source	Carbon source L-Ornithine 10 mM	+0.1	+0.7	-0.4	-0.3	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	-0.4	+0.2	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.5	+0.8	+0.1	-3.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.1	+0.1	+0.6	-2.2
phage	P. simiae Grant Run MOI 10	+0.2	-0.4	+0.6	+0.2	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.4	-0.2	+0.8	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.4	+0.2	-1.9	+0.6
soil	soil sample 5; outgrowth in LB	+0.1	-1.3	+0.3	-0.3	+0.7
motility	inner cut, LB soft agar motility assay	-0.1	+0.0	-0.4	+1.2	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+0.1	+0.6	-1.3	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	-0.5	-0.2	-0.9	+1.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	-1.0	-0.3	+0.1	+1.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-0.4	+0.8	-0.4	+0.8
stress	Doxycycline hyclate 0.001 mg/ml	-0.0	+0.3	-0.4	-0.6	+1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-1.1	+0.1	+0.7	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.8	+0.1	+0.8	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.3	-0.3	-0.3	+2.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	-0.2	+0.0	+1.2	+0.9
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+0.7	-0.6	+1.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.3	-0.2	+0.7	+1.4
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.1	+0.0	+0.5	+1.8