Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27850 and PS417_27855 are separated by 6 nucleotidesPS417_27855 and PS417_27860 overlap by 4 nucleotidesPS417_27860 and PS417_27865 are separated by 221 nucleotidesPS417_27865 and PS417_27870 are separated by 8 nucleotides PS417_27850: PS417_27850 - biopolymer transporter ExbB, at 6,003,559 to 6,004,539 _27850 PS417_27855: PS417_27855 - biopolymer transporter ExbD, at 6,004,546 to 6,004,971 _27855 PS417_27860: PS417_27860 - energy transducer TonB, at 6,004,968 to 6,005,717 _27860 PS417_27865: PS417_27865 - LysR family transcriptional regulator, at 6,005,939 to 6,006,859 _27865 PS417_27870: PS417_27870 - ATP-dependent DNA helicase RecG, at 6,006,868 to 6,008,943 _27870
Group Condition PS417_27850 PS417_27855 PS417_27860 PS417_27865 PS417_27870
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -7.7 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -7.6 -2.9
liquid stress Fraxetin 2 mM; liquid stress N.D. N.D. N.D. -6.1 -3.8
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -5.4 -4.3
soil soil sample 7; outgrowth in LB N.D. N.D. N.D. -6.5 -3.1
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. N.D. -5.5 -3.7
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -6.5 -2.7
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. -6.3 -2.7
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. -6.4 -2.5
solid stress Fraxetin 1 mM; solid stress N.D. N.D. N.D. -4.6 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -5.6 -3.1
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. -6.4 -2.2
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. -6.3 -2.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -7.8 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -4.4 -4.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -5.2 -3.2
solid stress Fraxetin 1 mM; solid stress N.D. N.D. N.D. -6.6 -1.7
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. -6.4 -1.9
soil soil sample 4; outgrowth in LB N.D. N.D. N.D. -6.2 -2.1
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. -3.1 -5.2
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. -2.7 -5.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -6.3 -1.9
liquid stress Fraxetin 2 mM; liquid stress N.D. N.D. N.D. -5.9 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -5.3 -2.9
soil soil sample 3; outgrowth in LB N.D. N.D. N.D. -6.1 -2.0
soil soil sample 5; outgrowth in LB N.D. N.D. N.D. -6.1 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.1 -5.8
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -6.7 -1.3
solid stress Fraxetin 1 mM; solid stress N.D. N.D. N.D. -5.0 -2.9
soil soil sample 8; outgrowth in LB N.D. N.D. N.D. -6.4 -1.5
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