Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_27840 and PS417_27845 are separated by 124 nucleotidesPS417_27845 and PS417_27850 are separated by 189 nucleotidesPS417_27850 and PS417_27855 are separated by 6 nucleotidesPS417_27855 and PS417_27860 overlap by 4 nucleotides PS417_27840: PS417_27840 - hypothetical protein, at 6,001,650 to 6,002,393 _27840 PS417_27845: PS417_27845 - oxidoreductase, at 6,002,518 to 6,003,369 _27845 PS417_27850: PS417_27850 - biopolymer transporter ExbB, at 6,003,559 to 6,004,539 _27850 PS417_27855: PS417_27855 - biopolymer transporter ExbD, at 6,004,546 to 6,004,971 _27855 PS417_27860: PS417_27860 - energy transducer TonB, at 6,004,968 to 6,005,717 _27860
Group Condition PS417_27840 PS417_27845 PS417_27850 PS417_27855 PS417_27860
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 -0.5 N.D. N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.5 N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% -0.7 -0.2 N.D. N.D. N.D.
phage P. simiae Grant Run MOI 10 -0.7 -0.1 N.D. N.D. N.D.
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x -0.7 -0.0 N.D. N.D. N.D.
phage JP1 MOI 10 -0.0 -0.7 N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.1 N.D. N.D. N.D.
phage Wcs_1 -0.8 +0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 -0.6 N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 0.1 -0.5 +0.2 N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 -0.9 +0.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.2 N.D. N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.5 +0.2 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 +0.4 N.D. N.D. N.D.
phage Wcs_0.1 -0.4 +0.3 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.4 N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 1 -0.5 +0.4 N.D. N.D. N.D.
motility inner cut, LB soft agar motility assay +0.4 -0.3 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.5 -0.2 N.D. N.D. N.D.
solid stress 80% Methanol 3 mM; solid stress +0.5 -0.2 N.D. N.D. N.D.
stress R2A with Fusaric 120 ug/mL +0.6 -0.1 N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.2 +0.5 N.D. N.D. N.D.
carbon source Carbon source L-Citrulline 10 mM +0.5 +0.3 N.D. N.D. N.D.
soil soil sample 2; outgrowth in LB +0.5 +0.2 N.D. N.D. N.D.
carbon source Carbon source L-Ornithine 10 mM +0.6 +0.2 N.D. N.D. N.D.
liquid stress 80% Methanol 3 mM; liquid stress +0.8 -0.1 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 +0.2 N.D. N.D. N.D.
soil soil sample 8; outgrowth in LB +0.9 -0.0 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress +0.6 +0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.7 N.D. N.D. N.D.
remove
PS417_27840
plot		 remove
PS417_27845
plot		 remove
PS417_27850		 remove
PS417_27855
plot		 remove
PS417_27860
plot