Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27785 and PS417_27790 are separated by 19 nucleotidesPS417_27790 and PS417_27795 are separated by 201 nucleotidesPS417_27795 and PS417_27800 are separated by 82 nucleotidesPS417_27800 and PS417_27805 are separated by 58 nucleotides PS417_27785: PS417_27785 - phosphoglucomutase, at 5,991,706 to 5,993,103 _27785 PS417_27790: PS417_27790 - acetylglutamate kinase, at 5,993,123 to 5,994,028 _27790 PS417_27795: PS417_27795 - orotate phosphoribosyltransferase, at 5,994,230 to 5,994,874 _27795 PS417_27800: PS417_27800 - exodeoxyribonuclease III, at 5,994,957 to 5,995,736 _27800 PS417_27805: PS417_27805 - orotate phosphoribosyltransferase, at 5,995,795 to 5,996,166 _27805
Group Condition PS417_27785 PS417_27790 PS417_27795 PS417_27800 PS417_27805
stress Cisplatin 0.01 mg/ml -0.1 N.D. -3.3 -5.1 N.D.
nitrogen source Adenine (N) +0.1 N.D. -4.8 -3.7 N.D.
supernatant control Vogels_fungal_media 0.1X -1.4 N.D. -4.9 -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. -4.5 -3.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. -5.3 -2.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. -5.2 -2.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -4.6 -3.2 N.D.
motility outer cut, LB soft agar motility assay -0.0 N.D. -4.7 -3.0 N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.0 N.D. -5.1 -2.6 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.1 N.D. -5.1 -2.6 N.D.
nitrogen source Inosine (N) +0.1 N.D. -4.6 -3.1 N.D.
soil soil sample 8; outgrowth in LB +0.3 N.D. -3.4 -4.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.0 N.D. -5.2 -2.4 N.D.
carbon source D-Mannose (C) -0.1 N.D. -5.1 -2.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. -4.3 -2.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 N.D. -4.5 -3.1 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.0 N.D. -5.2 -2.4 N.D.
carbon source D-Mannose (C) -0.2 N.D. -5.1 -2.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. -4.4 -3.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB +0.1 N.D. -5.1 -2.4 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.3 N.D. -5.1 -2.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.1 N.D. -5.0 -2.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 N.D. -4.4 -3.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. -4.4 -2.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. -4.5 -3.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. -5.2 -2.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 N.D. -4.3 -3.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. -4.4 -2.6 N.D.
carbon source L-Valine (C) +0.3 N.D. -4.7 +3.4 N.D.
carbon source L-Valine (C) +0.9 N.D. -4.9 +3.4 N.D.
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