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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF541 and GFF542 are separated by 28 nucleotides
GFF542 and GFF543 are separated by 279 nucleotides
GFF543 and GFF544 overlap by 13 nucleotides
GFF544 and GFF545 are separated by 198 nucleotides
GFF541 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 580,377 to 581,102
GFF541
GFF542 - no description, at 581,131 to 581,757
GFF542
GFF543 - Uncharacterized deacetylase PA5390, at 582,037 to 583,191
GFF543
GFF544 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 583,179 to 585,959
GFF544
GFF545 - hypothetical protein, at 586,158 to 587,525
GFF545
Group
Condition
GFF541
GFF542
GFF543
GFF544
GFF545
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.6
-0.7
-0.2
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.1
-1.1
+0.0
+0.1
phage
phage_bap4
-0.2
-0.6
-0.2
-0.1
-0.1
complex community
Community=guar; Passage=4
-0.3
-0.2
-0.6
-0.1
+0.1
phage
phage_bap4
-0.1
-0.2
-0.4
-0.3
-0.0
phage
phage_bap4
-0.1
-0.4
-0.1
-0.1
-0.1
complex community
Community=guar; Passage=4
-0.4
-0.3
-0.2
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.3
-0.1
-0.0
-0.1
phage
phage_bap4
-0.0
-0.3
-0.1
-0.1
-0.1
no phage control
no phage control
-0.2
-0.2
-0.2
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.3
-0.1
-0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.4
-0.1
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.4
+0.1
-0.1
+0.0
complex community
Community=Kojac gum; Passage=4
+0.2
-0.3
-0.0
+0.0
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.2
-1.2
+0.7
-0.1
-0.0
complex community
Community=arabino-guar; Passage=4
-0.0
-0.6
+0.2
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.1
-0.2
-0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.1
-0.3
-0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.4
+0.1
-0.0
-0.1
complex community
Community=arabino-guar; Passage=4
+0.4
+0.1
-0.4
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.3
+0.1
-0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.0
+0.2
-0.1
+0.0
complex community
Community=guar; Passage=4
-0.1
-0.2
+0.5
-0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
-0.2
+0.3
+0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.2
-0.1
+0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.2
-0.4
+0.1
+0.0
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.2
+0.3
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.3
+0.4
+0.1
-0.2
complex community
Community=arabino-guar; Passage=4
+0.1
+0.4
+0.2
+0.1
-0.1
complex community
Community=guar; Passage=4
-0.2
+0.3
+0.5
+0.2
+0.1
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